Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l24
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489...    31   0.72 
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           28   6.7  
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    28   6.7  

>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
            28649069-28649144,28649356-28649426,28649524-28649589,
            28649677-28649766,28649874-28650050,28650513-28650548
          Length = 1442

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 477  AAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKA 608
            AAVE+ T E ++  +E   A  A+     + E    SFKE+FK+
Sbjct: 1225 AAVERATAEARERAIEKAKAEKAAAEARERRERYRSSFKESFKS 1268


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +3

Query: 93  LVISQTKTMTSIL*RSPYSLRKGTIRASHGCCQTLELISPRQYQAARQGDSRQY*CSNEK 272
           L I  TKT + +  +  Y+L  G++    G     + I P     A +  S +   S  K
Sbjct: 301 LAIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVK 360

Query: 273 CVA*TPVRY 299
            VA  PV Y
Sbjct: 361 AVANDPVAY 369


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 447 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 554
           ++S EAQ  + AVE    + K  K  N N  GA  G
Sbjct: 57  RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,068
Number of Sequences: 37544
Number of extensions: 245863
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)