Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l24
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +3

Query: 447 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGA----SNGTSSKSEDNALSFKE 596
           ++ + A+N    +  + +++++++ +NG    A    SNGTSS ++D    F++
Sbjct: 9   QLRSNAENLSRCLHVLLEKIENIEKKNGKEQDADSTKSNGTSSSNKDGKEKFEQ 62


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 105 VKSLSFQVFNGILLIARFFLHNARCNN 25
           ++S++    +G L+I   FLHNA CN+
Sbjct: 303 IQSINLDTCDGSLVICVKFLHNADCNH 329


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 599 GFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 501
           GFL R  + LA+T   + C  RV V  +D ++F
Sbjct: 327 GFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,735
Number of Sequences: 27780
Number of extensions: 223034
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)