Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l23
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 223  RDSGQNKPSFNFVNNEQEDKEADCE 297
            R+  QN  SFN      E  EA+C+
Sbjct: 1865 RNHDQNNSSFNDSKESNEISEAECD 1889


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 472 NFLGFDNPNILKLTKMKWLSENNDEALDSRKFNAL 576
           N++G ++  I ++  + W S N D  + S K  A+
Sbjct: 796 NYVGSEDSVIPRILYLTWYSSNGDIKVPSTKVLAM 830


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 173 YTFCSDKLLFSFIFDSFIRQFGDYFKM 93
           Y F    L +  I  +FI   G+Y+K+
Sbjct: 566 YAFIPGNLKWLDIHGNFIESLGNYYKI 592


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 LGFDNPNILKLTKMKWLSENNDEALDSR 561
           LG+    I ++ K KW    N E L +R
Sbjct: 610 LGYQKGGISEIQKHKWFDGFNWEGLRAR 637


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 383 SPLLSFGDFFLDT 345
           SPLLS G +++DT
Sbjct: 271 SPLLSHGLYYVDT 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,452
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)