Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l17
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 453  YHTYWYSRLHNVFPNLDTRYQSLYVFFRLR 364
            +  +W+ RL  +    D  Y  +++FF  R
Sbjct: 980  FRGFWHHRLAEIKRRPDLEYGKVWLFFGCR 1009


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 532 IKIHQLSAAKCTLFFYQSCRSTP 464
           +K H++  + C+ +F +  +STP
Sbjct: 43  LKAHRVVLSACSPYFRELLKSTP 65


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 LPIVGEFLSCLGFIV 552
           +P++G + +C+ F+V
Sbjct: 254 VPLIGSYFNCIMFMV 268


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 LPIVGEFLSCLGFIV 552
           +P++G + +C+ F+V
Sbjct: 254 VPLIGSYFNCIMFMV 268


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 LPIVGEFLSCLGFIV 552
           +P++G + +C+ F+V
Sbjct: 254 VPLIGSYFNCIMFMV 268


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = +1

Query: 256 ASLAVQNLSLDKACRVNLNYSDEV------CTALTLRQTENYTEAEENVQRLIASVQVWK 417
           A   +   ++D    VN +  DE       C        +     +EN+ + + S+ + +
Sbjct: 35  AESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDE 94

Query: 418 NVVQTAIPVCVIL 456
           NV++  +  C ++
Sbjct: 95  NVIKKLVAECSVI 107


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 LPIVGEFLSCLGFIV 552
           +P++G + +C+ F+V
Sbjct: 322 VPLIGSYFNCIMFMV 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,718
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)