Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l14
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    51   7e-07
08_02_1131 + 24523435-24523447,24526425-24527509                       29   4.5  

>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
 Frame = +1

Query: 382 DPTGKEVIVDALCAAAVLRGAHVFAPGVMGLPSSLHLDEKVDIYGDLEKKCKRG---LKS 552
           D + KEVIV   CA +VLRGA V+ PGV+   S +   +KV +   +E+  + G   + +
Sbjct: 142 DQSIKEVIVSRKCAESVLRGAQVYIPGVLACSSHVEKGDKVAVSVAIEQPAEDGGWTVDA 201

Query: 553 LYDGKK-KYVGTGYLKMLRSELFDNGIKPSGIAV 651
            ++ +K  Y+G G   M RS +F     P G+AV
Sbjct: 202 HHEERKGLYIGQGITAMSRSGIFR---VPHGVAV 232


>08_02_1131 + 24523435-24523447,24526425-24527509
          Length = 365

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/86 (27%), Positives = 35/86 (40%)
 Frame = +1

Query: 412 ALCAAAVLRGAHVFAPGVMGLPSSLHLDEKVDIYGDLEKKCKRGLKSLYDGKKKYVGTGY 591
           AL A   L G         G+  +L   E   + G+  K C   L++L +G    +GT  
Sbjct: 184 ALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGE-SKFCATSLEALVEGAMAALGTRD 242

Query: 592 LKMLRSELFDNGIKPSGIAVHTLMPV 669
           +  L S L   G      AV  ++PV
Sbjct: 243 IAALASTLPRGGAPLQAYAVRAVLPV 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,330
Number of Sequences: 37544
Number of extensions: 360270
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)