Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l12
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 252 PKEQNNFPQDFISPSKLEVFHQ 317
           PK +NNF    +S     +FH+
Sbjct: 633 PKSENNFASQELSREGRRIFHK 654


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 252 PKEQNNFPQDFISPSKLEVFHQ 317
           PK +NNF    +S     +FH+
Sbjct: 601 PKSENNFASQELSREGRRIFHK 622


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 183 NVTSSFLQQTNNIIQ 139
           N+T SF +  NN IQ
Sbjct: 572 NMTDSFTRIANNTIQ 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,126
Number of Sequences: 438
Number of extensions: 1204
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)