Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l08
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    28   1.2  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   1.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   1.6  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   4.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.3  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   8.3  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 33  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 212
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 213 RPSL 224
           R  L
Sbjct: 86  RGML 89


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 33  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 212
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 213 RPSL 224
           R  L
Sbjct: 86  RGML 89


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 423 SNPVYPFLFFGTEGSREQCPIYRS 352
           SN +Y FLF   E   EQ PIY S
Sbjct: 545 SNSIYFFLFAKDETVSEQAPIYNS 568


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 326 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFD 424
           PMVP+  T +RYI       S  K++K   G D
Sbjct: 49  PMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLD 81


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = -3

Query: 581 QKLNALLLEPVSETLYPPVANRNTALFSCT--CRSVFL---FLKCH*IIPLHLKMMENRI 417
           QK   LL E + E L       +T L + T  C +  +   +     + P  + +ME  +
Sbjct: 166 QKQPFLLPEVILEPLVMACQTNSTTLLTITLDCFAKLIDYNYFDSPTLNPSDITLMERVV 225

Query: 416 QYILSCFLVQKAPENNVQYTVV 351
             I SCF  +  PE  VQ  +V
Sbjct: 226 NTIASCFCGESTPE-RVQLQIV 246


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 206 FLIHLYNLWFLKASVTWF 153
           FLI L  +WF  A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 482 VFLFLKCH*IIPLHLKMMEN--RIQYILSCFLVQK--APENNVQYTVVSY 345
           V  FL    IIPL L++MEN   +   ++ F+VQK    +  +QY   +Y
Sbjct: 146 VINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,622
Number of Sequences: 5004
Number of extensions: 52051
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)