Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l06
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.89 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 17/88 (19%), Positives = 43/88 (48%)
 Frame = +2

Query: 203 RLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMRKMYWDYELEEMAELWARQC 382
           +LY   M  + +YQ  L   ++ D I  G+       + +  ++ D+ ++  A    +  
Sbjct: 436 QLYKKVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLFTDFYVDLDAVTGHQSQ 495

Query: 383 QKRHDECRNTIRFNALQNMDVRPVVPKV 466
           Q++ ++ ++ +R + L+ +D +P   K+
Sbjct: 496 QQQEEQTQSRVRAH-LKRLDHQPYQYKI 522


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 188 NKQSPRLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMR 325
           N ++ RLY   ++N+ R    + +N  R  + MGL   Q    N++
Sbjct: 18  NSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 63


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 89  NMLCKDNNTDRYLQYCSHPDCSLK 160
           N  C D++ ++Y  +C+  +  LK
Sbjct: 189 NKSCTDSDIEKYKMFCNLENVKLK 212


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 188 NKQSPRLYASGMTNWMRYQILLLHNRHRDNIAMGLEAGQPPATNMR 325
           N  + RLY   ++N+ R    +++N     + +GL+  Q    N++
Sbjct: 31  NPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLK 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 383 DIDAPTVPPSLRVRNPNT 330
           D + P+V P LR  NP T
Sbjct: 63  DREQPSVYPLLRFENPET 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,055
Number of Sequences: 438
Number of extensions: 4915
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)