Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l04
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   4.1  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   5.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   5.4  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   7.1  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         25   7.1  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   7.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 383 DTETKALPPPSRPAKVPSMPETR-SGVQVSILGADSPLGHYVALLLKQCPCIKKLRLYEA 559
           DT  +++   +RP++ P +  T    + +  L     +  +  LLL   PC+ +  +Y  
Sbjct: 52  DTYPESVSKRARPSQKPPLRSTHLPHLLIFALFVGKHIACFHHLLLSSLPCLPRSEIYRL 111

Query: 560 KHC 568
            +C
Sbjct: 112 ANC 114


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 374 KKVDTETK--ALPPPSRPAKVPSMPETRS 454
           K++ T+ K  +LPPP R    P+MP   S
Sbjct: 242 KQIPTQQKPSSLPPPERALPAPTMPTPSS 270


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 98  WSCLLDAYVPLTFRSDVFNRCYA 166
           WSC L  +V   F S+ F R YA
Sbjct: 97  WSCALPCFVDSFFPSNFFLRTYA 119


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 320 FGTPFRRVSCKEEEKLPPKKVDTETKALPPPSRPAKVPS-MPETRS 454
           FG+ F   S K++ ++PP          PP ++P   PS +P T S
Sbjct: 736 FGSLFG--SKKKQTEIPPVSSSPPHNDAPPKAKPISAPSELPNTTS 779


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 62  NPSTVFIKSKHLWSCLLDAYVPLTFRSDVFNRCY 163
           NP T    S ++  C   + +PL+FRS V N+ Y
Sbjct: 342 NPKTPQSFSTNIVQCASPSPLPLSFRSPVPNKDY 375


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 149 IRHSETLMVHMHRVDMTINVLI 84
           I H++ L  H+HR+D+ +  ++
Sbjct: 49  ISHAKALRTHLHRLDINVQQIV 70


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 282 CNKPGFFFFILSQGCGHFGSTSGGISTNALLHSSSPDFLA*HLLNT 145
           CN P    F   Q    F +  G  +TN L      D LA +LL T
Sbjct: 550 CNHPQSLNFQFEQDVDAFNALDGAANTNKLASDQDVDDLA-NLLET 594


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 74   VFIKSKHLWSCLLDAYVPLTFR---SDVFNRCYAKKSG 178
            +FI   HLW    D ++P   R   ++V + CY  + G
Sbjct: 1106 IFISVLHLWRSADDLHLPYITRALLTNVLSNCYQFEDG 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,804
Number of Sequences: 5004
Number of extensions: 56038
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)