Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14l03
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    31   0.41 
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    30   0.72 
Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    28   2.9  
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    28   2.9  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical pr...    27   6.7  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    27   6.7  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.7  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.7  
U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 346 FSLIIVISYIC*SFVLCLVNLLIICSV 426
           ++L   I+YIC S +LC+  L+++C V
Sbjct: 204 YTLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 346 FSLIIVISYIC*SFVLCLVNLLIICSV 426
           ++L   I+YIC S +LC+  L+++C V
Sbjct: 226 YTLFSSITYICGSIILCIAVLMVVCVV 252


>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 314 LPAQQPVVTCDNAAARWLLIGARTHHLIL 228
           L  + P++TCD  A RW++ G R   LI+
Sbjct: 270 LSPKVPIITCDGIAKRWMVPGWRLGWLII 298


>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 20  TCLYHARRWQERRQTE---DQRGERRTSASST 106
           +C+Y +  W ERRQ E   DQ  ER  S  ST
Sbjct: 191 SCVYGSGTWSERRQYEEPFDQVSERTISICST 222


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 20  TCLYHARRWQERRQTE---DQRGERRTSASST 106
           +C+Y +  W ERRQ E   DQ  ER  S  ST
Sbjct: 191 SCVYGSGTWSERRQYEEPFDQVSERTISICST 222


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 155 RSIVVREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVS 36
           R  +V++G C      L W L+ FA L+   F  ++ I+S
Sbjct: 658 RPRIVKKGVCEPQCTELLWFLLLFAPLSFCTFAIAVPIIS 697


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 149  STVAIGLGGGVLWHHP 196
            +TV  G GG  LWHHP
Sbjct: 3546 TTVESGSGGEELWHHP 3561


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 149  STVAIGLGGGVLWHHP 196
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>U88180-2|AAB42298.3|  355|Caenorhabditis elegans Hypothetical
           protein T27A3.5 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 231 NQVMRARANQEPTRGRVIAGDDGLLRRQSATKPRTDRA 344
           N+   AR NQEPT    I  +DG    +   +P   R+
Sbjct: 5   NKKRNARKNQEPTSNMTIETEDGTQADRPKKRPAKKRS 42


>U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical
           protein C01G5.9 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 139 RTTIDRSYRSRRGSTVASSCHGYLSADLRARIR*CVRAPIRSQRAAALSQVTTGCCAGS 315
           + TI  S+    G+TV  S +GYL+  +  R+    R  I  +  A   ++T  C   S
Sbjct: 83  KLTIFSSFTGDDGTTVILSSYGYLNRRVYCRLFDENRQEIYQKAVAVFPELTIKCSESS 141


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 149  STVAIGLGGGVLWHHP 196
            +TV  G GG  LWHHP
Sbjct: 1392 TTVESGSGGEELWHHP 1407


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 149  STVAIGLGGGVLWHHP 196
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 149  STVAIGLGGGVLWHHP 196
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK354.3 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 36  RDDGKREDKQKTSEASEEHQRPVQKTRSGRT 128
           +DD K +DK+K++  SE+ +   +KT   ++
Sbjct: 270 KDDKKEDDKEKSATKSEDKKSDEKKTEEKKS 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,006,540
Number of Sequences: 27780
Number of extensions: 194306
Number of successful extensions: 860
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)