Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14k22
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 29 0.41
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 3.9
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 25 3.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 6.7
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 6.7
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 24 8.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 24 8.9
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 24 8.9
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 24 8.9
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 24 8.9
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 28.7 bits (61), Expect = 0.41
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 134 GELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFIREELRQAKM 283
G+L+ D+ F QL I+ + + + HRDL+ E + + ++ RQ K+
Sbjct: 145 GKLDEDLARSFAMQL--INALVYLHKNFIVHRDLKIENVLLTQDSRQVKL 192
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 113 PEKMEEAGELEADVGARFDQQLAS 184
P K E G+L ++ GARF Q L S
Sbjct: 170 PLKTELYGQLNSECGARFPQTLKS 193
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 77 LKMSNAPDDENEPEKMEEAGELEADVGARFDQQ 175
L+ S++P+ +N+P MEE + R QQ
Sbjct: 13 LRESSSPNSQNKPNAMEEIKRRRLQLEQRLAQQ 45
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 81 KCRTHQMMKMNPKKWKKQGNWKLMLALDLTNNS 179
+C++H+M+ +NP + G + ++ LTNN+
Sbjct: 1422 ECKSHEMLTINPPSGQTCGEY---MSAFLTNNT 1451
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 95 PDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFI----RE 262
PD++ E ++ + + E + + +Q++++ KID D D MF+ E
Sbjct: 394 PDEDEESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEE 453
Query: 263 ELRQ 274
E+RQ
Sbjct: 454 EVRQ 457
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 320 VSSMQPDERPKFAFSPDVTPLV*TSFPVASLDAQTDPCRFSDEDLYSRVV 171
+S +P ++ K A P + + PV DP F D+D + +VV
Sbjct: 304 ISDYRPPKKRKRAAWPPYKKVDRVNVPVVHDTTAFDPSTFDDDDGHYKVV 353
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 374 LNRYSS-IHSLLP*NL*GEVSSMQPDERPKFAFS 276
L R+S+ + +LP +S ++PDERP +++
Sbjct: 101 LQRHSNALVDILPPEADSSISMLRPDERPDVSYA 134
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 101 DENEPEKMEEAGELEADVGARFD 169
D NE ++ EE +E D+G FD
Sbjct: 260 DNNESDQDEEDALIEEDLGNEFD 282
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 83 FSTATSTRPMKIYLPNFDYENQRF 12
F TS P KI + +FD++ RF
Sbjct: 190 FYEVTSRYPQKITVVSFDFKRDRF 213
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 425 YQILIQFICFKDQVERRLNRY 363
Y++ FI FKD + + +N Y
Sbjct: 1101 YEVYTAFILFKDDLAKTVNEY 1121
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 247 HFRSQVSMRKRIHVDFQT 194
HF + VS+ R+H+DF T
Sbjct: 545 HFSTLVSLLIRLHLDFHT 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,180
Number of Sequences: 5004
Number of extensions: 32433
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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