Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14k21
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 45 4e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 44 1e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 43 2e-04
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 29 2.9
05_04_0369 - 20691100-20691235,20691318-20691488,20691540-206919... 29 3.9
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 6.8
06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706 28 6.8
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 28 6.8
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 27 8.9
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761... 27 8.9
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007... 27 8.9
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = -2
Query: 235 QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDLGLP 56
Q GF KGR +E+LI +++C K + + LD A+D+V+ L +IL G P
Sbjct: 6 QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65
Query: 55 GKLLKWIFN 29
+ WI N
Sbjct: 66 DNWISWIKN 74
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = -2
Query: 235 QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDLGLP 56
Q GF KGR +E+LI +++C K + V LD A+D+V L KIL G P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
Query: 55 GKLLKWI 35
+ WI
Sbjct: 1081 ENWISWI 1087
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/91 (23%), Positives = 45/91 (49%)
Frame = -2
Query: 307 SIAIVVSTVSGPVSILCVYCPPPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFL 128
S+ IV ++G + + + +GF KG++ + + CQ SK V + L
Sbjct: 397 SLKIVTKLLAGRLQGVILKLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKL 456
Query: 127 DVQGAYDNVDLIPLIKILHDLGLPGKLLKWI 35
D + A+D ++ ++ ++ +G P K ++W+
Sbjct: 457 DFEKAFDTIEHSAILSVMQHMGFPLKWIEWV 487
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 595 KQNLTLYLMDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITG 419
K N +YL++P L + ++ + +K + I DN + +L W+ P ITG
Sbjct: 171 KINAGIYLLNPSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITG 229
>05_04_0369 -
20691100-20691235,20691318-20691488,20691540-20691940,
20692084-20692452,20692540-20692986,20693065-20693772
Length = 743
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 425 NRIQLHWIKCTKRAWRCRYIDKKYSSIQNYQNSILSGYSKYRYCSVDSIRTSVHSVC 255
N I L W C K A ++D + ++ N QN G Y Y ++ S R + +C
Sbjct: 639 NSIWLSWQWCQKHAPEFAFLDPQVVTVTNLQND-RQGMVNYIYDTLWSRRDKEYIMC 694
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 377 CRYIDKKYSSIQNYQNSILSGYSKYRYCSVDSIRTSVHSV 258
CR+++ S+Q+ I+ Y K +CS SI+ + V
Sbjct: 437 CRFLEVIKESMQSLWIEIVKKYQKLGFCSTKSIKDCIPQV 476
>06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706
Length = 320
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 413 LHWIKCTKRAWRCRYIDKKYSSIQNYQNSILSGYSKYRYCSVDSIRTSVHSVC 255
L W C K A ++D + +I N QN G Y Y ++ S R + +C
Sbjct: 265 LSWQWCQKNASEVAFLDPQVVTITNLQND-RQGIVNYIYDTLWSCRDKEYIMC 316
>06_02_0008 - 10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 308 LNILIKCCFDSF-ELKSISYQYTYTAMLVLCILSNVIVSGYIN 433
L +LI SF ++KSI Y TA +++C+L V+V N
Sbjct: 877 LGLLIAYSAGSFRKVKSIGYLIIITAAVLICLLIQVLVLSSTN 919
>11_06_0349 + 22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -1
Query: 380 RCRYIDKKY-----SSIQNYQNSILSGYSKYRYCSV 288
R R +D Y S +Q Q ILS Y KY+ CSV
Sbjct: 940 RFRMVDYMYGLENLSKLQQNQAPILSSYVKYKNCSV 975
>09_02_0348 -
7616686-7616802,7616888-7617176,7617259-7617429,
7617508-7617680,7617789-7618394,7618482-7618793,
7619007-7619032,7619077-7619191
Length = 602
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 413 LHWIKCTKRAWRCRYIDKKYSSIQNYQNSILSGYSKYRYCSVDSIRTSVHSVC 255
L W C K A ++D + ++ N QN L G Y Y ++ S R + +C
Sbjct: 412 LSWQWCQKHAPEVAFLDPQVVTVTNLQNDRL-GMVNYIYDTLWSRRDKEYIMC 463
>08_02_0535 +
18298244-18298486,18299937-18300353,18300680-18300757,
18300893-18301045,18301131-18301239,18301321-18301487,
18301571-18301954
Length = 516
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 341 FELKSISYQYTYTAMLVLCILSNVIVS 421
F S++ QYT TA LVL I S V+ S
Sbjct: 338 FTRDSVNLQYTTTATLVLSIYSKVLKS 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,017
Number of Sequences: 37544
Number of extensions: 316777
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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