Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14k18
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    30   0.37 
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    28   1.5  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   4.6  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   4.6  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    25   8.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.0  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 266 ENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVN 445
           EN K + + +SG P ++  +  N KP L  KKS+ +        I   + V    + S  
Sbjct: 275 ENRKQYLQNKSGSPVEETAI-LNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEE 333

Query: 446 DSSQALP 466
           ++ ++LP
Sbjct: 334 EAVKSLP 340


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 197 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 376
           M + V TL      LD+  + ++   K   E + G P     L + GK + ++K +   H
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60

Query: 377 GVHDGDVIILL 409
            +  G V+ L+
Sbjct: 61  -LEGGSVLHLV 70


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 431 NLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRI 571
           N ++  S+    SGI  ++ +    P++S  +S   +NTPV    +I
Sbjct: 136 NTTIGVSTPRTDSGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKI 182


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 254 DLELENFKAFCEIESGFPAKDITLHFNGKPLLNNK 358
           D +L N   F E+E    A+DI   F GK  + ++
Sbjct: 32  DCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSR 66


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 398 IILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMA 535
           I L  + +S+++   N S  A+ SG+AS  F N +    + NTSM+
Sbjct: 49  IALSEIPSSSKSGKTNGSKAAVESGLASGAFGN-RTGNMNRNTSMS 93


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 401 ILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASR--NTPVEEDPRII 574
           +L H  +S   +   D   A PS   S    N  +PTT  NTS A    N+     PR++
Sbjct: 277 VLWHNNSSTPQIQFRDLPGAHPSPTPS----NAGIPTTLTNTSSAPNFANSTFRFPPRVV 332


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 224  DDIFVLDVSEDLELENFKAFCEI--ESGFPAKDITLHFN 334
            D+ F+   +  L +ENF+ FCE+  E      D TL +N
Sbjct: 1018 DESFLAIEAVHLLIENFEKFCEVPREISLLLDDPTLFYN 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,950
Number of Sequences: 5004
Number of extensions: 57515
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)