Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14k18
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552... 65 6e-11
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 39 0.004
09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857... 31 0.89
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797... 31 0.89
07_01_0622 - 4625246-4627759 31 1.2
03_05_0549 - 25444234-25446792 30 1.6
01_01_0946 - 7442907-7443284,7443797-7445122 30 1.6
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 30 2.1
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441 29 2.7
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 29 3.6
07_03_0794 + 21562995-21563004,21564151-21565799 29 4.8
01_06_0033 + 25765300-25765758 29 4.8
01_03_0030 - 11787280-11787393,11787487-11787714,11788828-117889... 28 8.3
>02_01_0742 +
5524149-5524214,5524609-5524641,5524750-5524880,
5525174-5525282,5525406-5525522,5525896-5525961,
5526314-5526376,5526459-5526503,5526690-5526751,
5526974-5527067,5527375-5527467,5527561-5527630,
5527816-5527892,5527976-5528033,5528135-5528166,
5528245-5528376
Length = 415
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +2
Query: 197 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 376
MKVTV T ++ I +DV D +EN KA E+E+ P + LHFNG+ + N K L
Sbjct: 1 MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLHFNGREIQNTDK-LSTV 59
Query: 377 GVHDGDVIILLHMVNS 424
GV DGD+++++ + ++
Sbjct: 60 GVQDGDLVMMVKVTSN 75
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +2
Query: 197 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESG---FPAKDITLHFNGKPLLNNKKSL 367
MKV++ TL F +DV ++ + K E+ G +PA L G +L N +L
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGN-VLKNDTTL 59
Query: 368 KEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNT 547
+E+ V + + I++ M++ + S S+ P+ S+D + P T A +
Sbjct: 60 EENKVVENNFIVI--MLSKKGSSSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVSE 117
Query: 548 PV 553
PV
Sbjct: 118 PV 119
>09_02_0399 -
8569478-8569795,8570219-8570287,8570760-8570848,
8571446-8571542,8571920-8571991
Length = 214
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 383 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 496
H G ++ L H++ A +L++N +Q + S S+D N
Sbjct: 123 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 160
>03_05_0149 -
21278418-21278747,21279170-21279238,21279709-21279797,
21280395-21280467,21280846-21280917
Length = 210
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 383 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 496
H G ++ L H++ A +L++N +Q + S S+D N
Sbjct: 115 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 152
>07_01_0622 - 4625246-4627759
Length = 837
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +2
Query: 437 SVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALL 616
S+N ++ LP + F+ IQV TT+ +A+R P+ ++ ++ LA++
Sbjct: 69 SINTTTNTLPGWYLGIWFNKIQVFTTA---WVANRENPITGPELKQAQLKISRDGNLAIV 125
Query: 617 KQNNPRLADALLTGSLDT 670
NN +++++ S T
Sbjct: 126 LNNNNTSSESIIWSSTHT 143
>03_05_0549 - 25444234-25446792
Length = 852
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +2
Query: 344 LLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVN-DSSQALPSGIASLDFSNIQVPTTSA 520
L ++ + + G G +++L+ M +S +V D +++ + D + Q+
Sbjct: 240 LSGHEPTCERIGAVYGAILLLVGMGSSKSESAVAVDKAESTLRNLDRFDANVKQMADNGR 299
Query: 521 NTSMASRNTPVEEDPRI-----IREMFLANPDQLALLKQNNPRLADALLTGSLDTFAAVL 685
+ +R E D R+ + E+ LAN D+ A+ +Q P L L TG+ A L
Sbjct: 300 LQPLLTRLLRGEPDTRVAMADYLGELALANDDKAAVAEQAGPLLVGMLRTGATPAKEATL 359
Query: 686 R 688
+
Sbjct: 360 K 360
>01_01_0946 - 7442907-7443284,7443797-7445122
Length = 567
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 239 LDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMV 418
+ V E + K + GF A++ L F G+ L N ++++GV G V+ L+ +
Sbjct: 51 MQVLESDSVAAVKLRIQNSKGFVARNQRLVFEGRELSRNDSHIRDYGVRYGSVLHLVIRL 110
Query: 419 NSAQNLSV 442
+ + +V
Sbjct: 111 SDPRRTAV 118
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 413 MVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNT 547
M N+AQ V+D ALP I +Q+PT + T++A R T
Sbjct: 1 MPNNAQCQVVDDRLSALPDEILIDILQRLQLPTAARTTTLARRWT 45
>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
Length = 757
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 263 LENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSV 442
+ + K + GF + L F+G+ L N + ++GV G+V+ L+ ++ + ++V
Sbjct: 62 IASVKLRVQTSKGFVVRKQKLVFDGRELARNDSRIMDYGVSHGNVLHLVIRISDLRLITV 121
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 407 LHMVNSAQNLSVNDSSQALPSGIASLDFSNIQV 505
L VN + NL V SS +LP G+ SLD S ++
Sbjct: 395 LRAVNLSGNLIVQISSGSLPKGLHSLDLSRNKI 427
>07_03_0794 + 21562995-21563004,21564151-21565799
Length = 552
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 383 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEED 562
H+ + I +V ++S Q LP G+ F++ PT S R + ED
Sbjct: 119 HEFEEIKPAQLVRQRSRTWSHESRQPLP-GVGRSQFASGGYPTASYEFRPEKRQRELRED 177
Query: 563 PRIIREMFL 589
P+II + L
Sbjct: 178 PQIIVKQLL 186
>01_06_0033 + 25765300-25765758
Length = 152
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +2
Query: 197 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 376
M++ V TLN L V +EN KA G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQ-LEDGRTLADY 59
Query: 377 GVHDGDVIILLHMVNSAQN 433
+ + L+ + N
Sbjct: 60 NIQKESTLHLVLRLRRGMN 78
>01_03_0030 -
11787280-11787393,11787487-11787714,11788828-11788916,
11789516-11789763,11789858-11790146,11790295-11790454,
11791228-11791404
Length = 434
Score = 27.9 bits (59), Expect = 8.3
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Frame = +2
Query: 245 VSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNS 424
V+E +++ F+ CE++S +IT F G K H +H G I+ +
Sbjct: 57 VTEGDQVDEFQRLCEVQSDKATIEITSRFKG----------KVHQIHFGPGDIVKVALGF 106
Query: 425 AQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTP----VEEDPRIIREMFLA 592
NL+ D+ A PSG S+ + P N +D R+++E L+
Sbjct: 107 FFNLNRVDA--ANPSGEGSVPSGTLSTPAVRHLAKQYGLNISDIQGTGKDGRVLKEDVLS 164
Query: 593 NPDQLALLKQNNPRLAD 643
L K+ L +
Sbjct: 165 YAASKGLCKEPTSALEE 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,859
Number of Sequences: 37544
Number of extensions: 328259
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -