Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14k14
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   1.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.3  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   4.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   4.0  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.0  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 38  NCLCEFKTFQILIK*PNQYPTTRYRRL 118
           NCL EF T Q+ ++  NQ     YRRL
Sbjct: 187 NCLMEFPTPQMELRINNQVAHANYRRL 213


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 189 MFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSES 353
           ++ +VY TG  +  T      S S   TTS  S      S  TTT  P+  SS S
Sbjct: 111 LYWSVYLTGNGVLQTT---VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 27/109 (24%), Positives = 45/109 (41%)
 Frame = +3

Query: 123 FGQKMLLRFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEE 302
           FG++ +L   L I   +LG +    +++  GL +    Y  A +      T      ++ 
Sbjct: 274 FGKEGMLWAMLSIA--LLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTG-----IKI 326

Query: 303 LSEPTTTLQPAQQSSESPLLSGVGFVLLMTIVINAAWLLVNIACVVGLH 449
            S   T    A Q S  P+L  +GF++L TI      +L N    +  H
Sbjct: 327 FSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFH 375


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 305 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEAT 162
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEAT 424


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 524 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL 619
           S+P +   +  L  +WL H  ++L +HG ++YL
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,641
Number of Sequences: 5004
Number of extensions: 48291
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)