Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14k04
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 44 3e-05
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.8
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 2.4
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.5
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.5
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 5.5
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.3
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 25 7.3
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 7.3
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 43.6 bits (98), Expect = 3e-05
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Frame = +2
Query: 206 FGINWPGNPNLNENFVDGEKNKSQNQELVKVTTTNKESYECQLPE--LRSTESTSIDDYD 379
+ W N ++ E +D K K++ +L + K Y C P L ST+ YD
Sbjct: 49 YSFEW-SNVSILEGDIDSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTTEPSYD 107
Query: 380 GPSPLHLLKPLMNKEMCSYRLES--YWSYEVCHGRYIRQYH-EEREG--KQINTQEYFLG 544
+N+ + +E+ YW+Y+ +G+++RQYH E ++G K + Y LG
Sbjct: 108 LQELRIQGTEKINELANVFLIENRGYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILG 167
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 421 RNVFIQIGKLLEL*SMPWKVYPAVSRRKRGQTNQHPRIFLGIL 549
RN+ + LL S+ W+VY V R T RIFL I+
Sbjct: 502 RNIALFFANLLSTDSIGWEVYDCV-RLTEDDTTASSRIFLKIM 543
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 206 FGINWPGNPNLNENFVDGEKNK-SQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDG 382
FG+ W +ENF+D K K S + +K + LR E T+ + G
Sbjct: 40 FGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLEENIPVNSAMENLRKVEETAGSFWSG 99
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 260 EKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDY 376
EK + E +KVT +++ + PEL ++ ++D Y
Sbjct: 41 EKEIANEYEALKVTERKEDTQDYNEPELHNSNDPTVDLY 79
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 476 FHGILHSSNSFPICMNTFLC-SSKALEG-EAVMDHR 375
FH + + NS +C+ F S K LEG + HR
Sbjct: 23 FHSVPQNKNSLSVCVAEFTALSEKPLEGFRKISSHR 58
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 260 LHQQNFRLNWDYQANLSQTKCYHRI 186
L ++ F LN+D+ NLS+++ Y+ +
Sbjct: 485 LFREQFLLNFDFTYNLSESEVYNTV 509
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 480 ISGSITKKERANKSTPKNISWDIGALKSRL 569
+ GS + K N N SWD LKS+L
Sbjct: 2337 LQGSRSMKYALNPGEEANYSWDFPILKSKL 2366
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 311 KESYECQLPELRSTESTSIDDYDGPSPLH 397
KES+ +L L+ TEST++ Y PLH
Sbjct: 368 KESFSARLQSLQDTESTNL--YISNLPLH 394
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 176 DFKGFDDSILFGINWPGNPNLNENFVDGEKNKSQNQE 286
D+ +D + + G N G+ NLN+ +D N NQE
Sbjct: 3 DYFAWDFANISGSNTSGSLNLNQLNLDNINNGLHNQE 39
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 212 INWPGNPNLNENFVDGEKNK-SQNQELVKVTTTNKESY 322
IN+P L ++ + + +++QEL ++T++N+E Y
Sbjct: 109 INYPTPERLQKSSASRKSGRMARSQELPRITSSNREIY 146
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 104 VRNSKMRVKIVMLSL--VYSCIGIEHD-FKGFDDSILFGINWPGNPNLNENFVDGEKNKS 274
++ M K +S VY IG + + K +L +N G PN++E + E S
Sbjct: 268 IKELLMNAKFYFISALGVYQKIGWDDEGIKSHIQELLEILNGLGVPNMDEENEEAEWETS 327
Query: 275 QNQE 286
+N+E
Sbjct: 328 ENEE 331
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 249 KFSFKLGLPGQFIPNKMLSSN 187
KF + G P QF+P + L+SN
Sbjct: 158 KFKSEYGYPSQFLPIEKLTSN 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,705
Number of Sequences: 5004
Number of extensions: 51422
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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