Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j23
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical ...    28   5.9  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   7.8  

>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 603 VINMDIFKHVYYENKYYIIQLYSKN 529
           +IN D   H Y+  KY I  +Y KN
Sbjct: 476 IINFDQSVHPYHREKYIISHMYDKN 500


>AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical
           protein K06H6.3 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 112 KSHILLTTNFLVHEVLNL*FCYIL 41
           KSH L TT+  + E+L L FC I+
Sbjct: 57  KSHFLPTTSVFMMEILKLSFCLII 80


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/48 (25%), Positives = 29/48 (60%)
 Frame = -1

Query: 366 GWNANHIVIHGISLLKIHIFIIAHSIST*LLNIS*RLIYIFLFLVCLF 223
           GW A+ +  + I++  + +F+IA + +  L+N    +++I  ++ C+F
Sbjct: 240 GWFAHPLFYYTIAVYDVALFVIAIATARALVNFDKAVLHIH-YIFCIF 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,007
Number of Sequences: 27780
Number of extensions: 290871
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)