Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j23
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 205 SLNSNSEKTNKEQENI 252
           +LN NS+K + +QEN+
Sbjct: 228 TLNHNSDKMSDQQENL 243


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 292 HKYITAEHFIKTHL 251
           HK  T +H +KTH+
Sbjct: 16  HKRFTRDHHLKTHM 29


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 570 YENKYYIIQLYSKNYI 523
           Y N  Y  +LY KNYI
Sbjct: 106 YNNNNYNKKLYYKNYI 121


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 281 YVLMEWAIIKI*IFKSEIPWI 343
           Y+ +EW IIK+   ++E  +I
Sbjct: 197 YISVEWDIIKVPAVRNEAFYI 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,147
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)