Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j21
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    29   1.6  
06_01_0200 - 1543260-1544561                                           27   3.7  
11_03_0016 - 8981218-8981290,8981512-8981558,8981688-8981842,898...    27   6.5  

>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -2

Query: 172 MIRVIRHCKVKKEYYNNKTIALHTFIIY 89
           ++ + RH K +K++Y+  ++ +H FI++
Sbjct: 236 LLSIYRHNKERKKWYSTLSLEIHVFILF 263


>06_01_0200 - 1543260-1544561
          Length = 433

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 115 WFCCYSILFSLYNGG*HESSRRNKNG--RCIGKACVNYARCNIVSLLKTV 258
           WFCC+S + S  +    +   RN  G   CIG  C++    + V +LK +
Sbjct: 33  WFCCHSSVLSGNSKYFADWLSRNDIGSNNCIGVDCISADYEHYVKVLKLI 82


>11_03_0016 -
           8981218-8981290,8981512-8981558,8981688-8981842,
           8981930-8982023,8982158-8982231,8982250-8982283,
           8982689-8982807,8983586-8983673,8983901-8983963,
           8983964-8984018,8984527-8984575,8985693-8985753,
           8986288-8986638
          Length = 420

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 373 FXKCLLLKLEHYFFVVQYH 317
           F KCLLL ++   F+V YH
Sbjct: 163 FNKCLLLNVQVILFLVSYH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,185,039
Number of Sequences: 37544
Number of extensions: 171081
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)