Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j13
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0499 + 10989645-10989929,10990303-10990395,10990952-109910...   129   2e-30
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    29   4.4  
07_03_1119 - 24118565-24118625,24119868-24119914,24120101-241201...    29   4.4  

>02_02_0499 +
           10989645-10989929,10990303-10990395,10990952-10991066,
           10991187-10991297,10991701-10991783,10991872-10991929,
           10992490-10992569
          Length = 274

 Score =  129 bits (311), Expect = 2e-30
 Identities = 72/145 (49%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
 Frame = +2

Query: 230 KQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMD 409
           K+    I +LE A LE  K G + ++LN DDH + LRK +R+P   RPDI HQ+LL + D
Sbjct: 74  KRRPGAIFVLERACLEVGKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAIFD 133

Query: 410 SPLNRAGLLQ-VYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLL 586
           SPL +AG LQ VY+ TEK VL EI P  R+P           QLL K +I A     KLL
Sbjct: 134 SPLTKAGRLQAVYVRTEKGVLFEIKPYVRMP----------PQLLQKLSITAVGKREKLL 183

Query: 587 KVIKNPVTSHLPVGVKKITMSFSSK 661
            VIKNPVT +LPVG KKI +S+S++
Sbjct: 184 NVIKNPVTRYLPVGAKKIGLSYSAE 208


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 341 FLKC-DHGHHSLIAQSYFHFSRFPVVRFPG 255
           FL C DHGHHSL A++   F R  V+ F G
Sbjct: 907 FLLCHDHGHHSLTAKA---FPRLQVLFFVG 933


>07_03_1119 -
           24118565-24118625,24119868-24119914,24120101-24120160,
           24120715-24120822,24121628-24121831
          Length = 159

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 125 CKVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQ 271
           C  H    +  + VSK  D E D +  ++  SH+      L++I  N Q
Sbjct: 104 CCKHQLAARLAEAVSKHQDIELDELSSNIRRSHVADSFTLLLLIRHNNQ 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,515
Number of Sequences: 37544
Number of extensions: 327289
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)