Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j06
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562...    33   0.20 
12_01_0289 + 2170820-2170880,2170997-2171070,2171312-2171420,217...    32   0.35 
10_01_0162 + 1820761-1821855                                           29   1.9  
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    28   5.8  
04_04_1486 + 33918611-33918955                                         28   5.8  
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    28   5.8  

>01_05_0714 +
           24555494-24555637,24555884-24556071,24556195-24556280,
           24556359-24556461,24556798-24557000,24557077-24557681,
           24557784-24557918,24558040-24558067,24559517-24559596,
           24559873-24559975,24560553-24560635,24560915-24561017,
           24561596-24561720,24562001-24562103,24562647-24562726,
           24563322-24563429,24563521-24563565
          Length = 773

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
 Frame = +1

Query: 406 NDGNPGDGF---HQPDTSSMVNL---ATLIKQSRTPSKHSINMEEYLLPL 537
           ++ NP DG     QP  +S + +   + L+K+  T S+HS+++EE ++P+
Sbjct: 400 SESNPPDGVTTDEQPTENSPIGVDRDSELVKEKGTSSRHSVSLEEDVMPI 449


>12_01_0289 +
           2170820-2170880,2170997-2171070,2171312-2171420,
           2171464-2171508,2171835-2171917,2172069-2172227,
           2173454-2173555,2173639-2173788
          Length = 260

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 337 WPSDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINM 516
           WP +  I V   ++   +   + +DG   D F   D      L   +KQS T  K+ ++ 
Sbjct: 86  WPLNVQICVGSSEELPVSAFCRTSDGE-WDAFRSIDMDVEARLMQQMKQSSTKQKNHVDS 144

Query: 517 EEYLLPLTSWEKV 555
           +E L+ L +W ++
Sbjct: 145 DE-LIALNAWHRI 156


>10_01_0162 + 1820761-1821855
          Length = 364

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 343 SDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEE 522
           ++ D T+ +         L+R     G  + +P   S       +++ R P+ H + M E
Sbjct: 221 AEHDSTLWKPMYTKLRSQLRRRLRFLGVSYGEPTAVSWKARYVAVRRRRVPAAHDVFMGE 280

Query: 523 YLLP-LTSWEKV 555
            LLP +T W +V
Sbjct: 281 ILLPVMTEWMRV 292


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 118 KIEDIIDMQKGEGHFNVRQVAF 183
           K+  I+DM + E HF+++Q AF
Sbjct: 260 KLRQILDMTEDEAHFHMKQSAF 281


>04_04_1486 + 33918611-33918955
          Length = 114

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 360 RIKNEKVLDQRCSEKK*WKSWGWFPP 437
           RI NE     R S  + W+ WGW PP
Sbjct: 78  RIGNED--GSRASSSQRWRRWGWPPP 101


>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 442 LVGGNHPQDFHHFFSEH---RWSSTFSFLIRLYLNRLAKKQHQA 320
           L GG    D+HHF   H    +SS F+F   +Y      + H+A
Sbjct: 230 LYGGVEYHDYHHFVGGHSQSNFSSVFTFCDYIYGTDRGYRYHKA 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,505
Number of Sequences: 37544
Number of extensions: 237814
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)