Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j06
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protei...    29   1.7  
U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protei...    29   1.7  
U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protei...    29   1.7  
U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    29   1.7  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine re...    28   5.2  
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    27   9.1  

>U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protein
           1, isoform e protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +1

Query: 343 SDSDITVLRMKKCLTNDALKRNDG---NPGDGFHQPDTSSMVNLATLIKQSRTPSKHSIN 513
           S  ++ ++ +++ L     KRN+G    PG      D + MVNL T+   ++  ++ S+ 
Sbjct: 319 SIQNLELIELREKLKEKVEKRNEGMAYRPGGELPHEDKAVMVNLETITPSTKKDAEVSVG 378

Query: 514 ---MEEYLLPLTS 543
               EEY  P  S
Sbjct: 379 SSWTEEYSSPCES 391


>U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protein
           1, isoform b protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +1

Query: 343 SDSDITVLRMKKCLTNDALKRNDG---NPGDGFHQPDTSSMVNLATLIKQSRTPSKHSIN 513
           S  ++ ++ +++ L     KRN+G    PG      D + MVNL T+   ++  ++ S+ 
Sbjct: 353 SIQNLELIELREKLKEKVEKRNEGMAYRPGGELPHEDKAVMVNLETITPSTKKDAEVSVG 412

Query: 514 ---MEEYLLPLTS 543
               EEY  P  S
Sbjct: 413 SSWTEEYSSPCES 425


>U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protein
           1, isoform d protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +1

Query: 343 SDSDITVLRMKKCLTNDALKRNDG---NPGDGFHQPDTSSMVNLATLIKQSRTPSKHSIN 513
           S  ++ ++ +++ L     KRN+G    PG      D + MVNL T+   ++  ++ S+ 
Sbjct: 450 SIQNLELIELREKLKEKVEKRNEGMAYRPGGELPHEDKAVMVNLETITPSTKKDAEVSVG 509

Query: 514 ---MEEYLLPLTS 543
               EEY  P  S
Sbjct: 510 SSWTEEYSSPCES 522


>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +1

Query: 343 SDSDITVLRMKKCLTNDALKRNDG---NPGDGFHQPDTSSMVNLATLIKQSRTPSKHSIN 513
           S  ++ ++ +++ L     KRN+G    PG      D + MVNL T+   ++  ++ S+ 
Sbjct: 513 SIQNLELIELREKLKEKVEKRNEGMAYRPGGELPHEDKAVMVNLETITPSTKKDAEVSVG 572

Query: 514 ---MEEYLLPLTS 543
               EEY  P  S
Sbjct: 573 SSWTEEYSSPCES 585


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 518 SMLILCXEGVLDCFISVAKLTIDEVSGWWKPSPGFPSFLFRASLVKHFFILNTVIS 351
           +M  L  +  L   I      I    G+W   P FPSFL R++ + H F  + VI+
Sbjct: 186 AMRSLSIQNALSTIIPAFFQIISSFFGFW---PMFPSFLRRSAQLLHIFFNSVVIT 238


>AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein4 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 36  KQNFAKKLFKFNRYGFYVSII 98
           +Q F +K+ K+ +Y FYVSI+
Sbjct: 125 EQTFLRKVVKYIQYAFYVSIV 145


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical protein
            C05D12.3c protein.
          Length = 1001

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 462  INHR*SIWLVETIPRISIISFQS--IVGQALFHS*YGYI*--IAWPRNNIRQWTLTAFQS 295
            +N++  I LV+T      IS+Q+  I+ +      Y YI   I  PRN++  W LT++  
Sbjct: 867  LNYQLEIQLVDTSRYDQPISYQNTTILSRDSSTCSYNYITPQITIPRNDVTSWILTSYDD 926

Query: 294  FFNFLFTSSAFQF 256
              N +     + +
Sbjct: 927  ENNLILRRIVYYY 939


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical protein
            C05D12.3a protein.
          Length = 1039

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 462  INHR*SIWLVETIPRISIISFQS--IVGQALFHS*YGYI*--IAWPRNNIRQWTLTAFQS 295
            +N++  I LV+T      IS+Q+  I+ +      Y YI   I  PRN++  W LT++  
Sbjct: 867  LNYQLEIQLVDTSRYDQPISYQNTTILSRDSSTCSYNYITPQITIPRNDVTSWILTSYDD 926

Query: 294  FFNFLFTSSAFQF 256
              N +     + +
Sbjct: 927  ENNLILRRIVYYY 939


>Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical
           protein C18E9.7 protein.
          Length = 855

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 406 NDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWE 549
           N G+ G+     +T+ +V+L  +IK+   PS+  ++ E  +L L  WE
Sbjct: 265 NSGDLGEDHPSENTNVLVDLPEMIKEYGEPSEIWLSDENEMLRL-DWE 311


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 313 SPLPDVVSWPSDSDITVLRMKKCLTNDALKRN--DGNP 420
           S + +V +  ++ D+T+  M+  LTND LK++  DG P
Sbjct: 261 SVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,645,301
Number of Sequences: 27780
Number of extensions: 221716
Number of successful extensions: 614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)