Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14j04
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY923173-1|AAX30054.1|   93|Homo sapiens kallikrein 13 splice va...    29   6.0  
AY923172-1|AAX30053.1|   93|Homo sapiens kallikrein 13 splice va...    29   6.0  
AF020763-1|AAB97676.1|  317|Homo sapiens unknown protein protein.      29   6.0  
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ...    29   7.9  
X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for ...    29   7.9  
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ...    29   7.9  
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.       29   7.9  
BC142626-1|AAI42627.1|  519|Homo sapiens COL4A1 protein protein.       29   7.9  
BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open readi...    29   7.9  
BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open readi...    29   7.9  
AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha ...    29   7.9  
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ...    29   7.9  
AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha ...    29   7.9  
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ...    29   7.9  
AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens ...    29   7.9  

>AY923173-1|AAX30054.1|   93|Homo sapiens kallikrein 13 splice
           variant 6 protein.
          Length = 93

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 CMFLRPGLPVPAKMGWLWNAADTP 303
           C  L PG  +  K+GWL+++ DTP
Sbjct: 56  CGCLAPGTILGLKVGWLFSSGDTP 79


>AY923172-1|AAX30053.1|   93|Homo sapiens kallikrein 13 splice
           variant 5 protein.
          Length = 93

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 CMFLRPGLPVPAKMGWLWNAADTP 303
           C  L PG  +  K+GWL+++ DTP
Sbjct: 56  CGCLAPGTILGLKVGWLFSSGDTP 79


>AF020763-1|AAB97676.1|  317|Homo sapiens unknown protein protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 389 PPLGHLNVIIFATLLPMTPGCHPRRGFAPGVSAA-FH 282
           PP   L +++    LP  P  HPRRG A  VSA+ FH
Sbjct: 116 PPFSCLGLLV----LPKKPSPHPRRGAARRVSASKFH 148


>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
           alpha1 chain of basement membrane (type IV) collagen.in
           neoplastic tissue).  ).
          Length = 1212

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 114 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 173

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 174 QMGLSFQGPKG 184


>X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for
           alpha-1 chain of collagen IV N-terminus. ).
          Length = 944

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
           protein.
          Length = 1669

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
          Length = 1669

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>BC142626-1|AAI42627.1|  519|Homo sapiens COL4A1 protein protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 229 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 318
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


>BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 229 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 318
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


>AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1318

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1669

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1318

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1669

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 PGVVIGHKPCMFLR--------PGLPVPAKMGWLWNAADTPG--AKPRRGWQPGVIGKSV 354
           PG ++GH P M L+        PG P P  +  L      PG    P     PG  G+  
Sbjct: 159 PGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG 218

Query: 355 AKMMTFKCPRG 387
              ++F+ P+G
Sbjct: 219 QMGLSFQGPKG 229


>AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30277 fis, clone BRACE2002752. ).
          Length = 200

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 229 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 318
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,557,532
Number of Sequences: 237096
Number of extensions: 1217669
Number of successful extensions: 4656
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4656
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)