Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14i17
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 25 1.4
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 1.8
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 25 1.8
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 24 3.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 3.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 4.3
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 23 4.3
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 23 5.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 23 5.6
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 23 5.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 7.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 23 7.4
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 23 7.4
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 22 9.8
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 22 9.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 22 9.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 22 9.8
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 22 9.8
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 1.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 199 CCNIHKCIKGN 231
CCN+ C+KGN
Sbjct: 113 CCNVPVCVKGN 123
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 169 FHFCVCIYIICCNIHKCIKGNGGK 240
FH V + + C + KC K N GK
Sbjct: 221 FHLIVLVVCMICLLAKCPKFNTGK 244
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 123 NITRQNIVFTGWLVLIPF-LCLH 188
+I R + + GW ++PF LC H
Sbjct: 388 DIIRNEVAYAGWSEVMPFILCSH 410
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 104 DSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAVIYINVLKVME 235
DS + EYH+ + + A + I + A+I + LK+ +
Sbjct: 799 DSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQ 842
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 172 HFCVCIYIICCNIHKCIKGNGGK 240
H CV ++ N+++ IK NG K
Sbjct: 773 HLCVATELLGKNLYELIKSNGFK 795
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.4 bits (48), Expect = 4.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 142 MFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLF 47
M L+IF L + +F NR STLF
Sbjct: 926 MDLLIIFPLSAAMSYFDPAQNLTSNRPNSTLF 957
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 45 INNVDVCLFRTVGNNFEKKQTLTF 116
INN+D + N EKK+ TF
Sbjct: 749 INNMDETAIHMLMNQLEKKENRTF 772
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 160 WC*FHFCVCIYIICCNIHKCI 222
WC +F V + I C IH+ +
Sbjct: 697 WCAINFPVVLCIDCSGIHRSL 717
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 129 TRQNIVFTGWLVLIPFLCLHLYHM 200
TR + F W VL+P + H++++
Sbjct: 93 TRVLLTFFCWTVLLPLIFKHVWNL 116
>SPBC4F6.18c |arf1||ADP-ribosylation factor
Arf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 94 SKLFPTVLNRQTSTLFMVLVNSSSKQQLLY 5
SKLF ++ ++ + MV ++++ K +LY
Sbjct: 6 SKLFQSLFGKREMRILMVGLDAAGKTTILY 35
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 105 SVFFRNYFRQS*TDRRQHYLWSS 37
SVF +NY+ S R ++WS+
Sbjct: 2191 SVFLQNYWMSSVYGRSWAFMWSA 2213
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 149 YRLAGVNSIFVSAFISYAVIYINVL 223
YR+ GVN F I + Y+ VL
Sbjct: 395 YRMVGVNKFFDREEIRDLIAYLRVL 419
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 174 MELTPASR*ILCFVW 130
+ LT ASR ILC VW
Sbjct: 736 LNLTCASRVILCDVW 750
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 22.2 bits (45), Expect = 9.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 160 WC*FHFCVCIYIICCNIHKCIKGNGGKKK 246
W F VC++I CC C K N KK
Sbjct: 46 WRSHGFIVCLHIRCC---ICCKYNSKIKK 71
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 207 ITAYDINADTKME 169
+ AYDIN D K+E
Sbjct: 171 VLAYDINPDKKLE 183
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 89 IISDSPKQTDVNIIY 45
+ S SP+Q DVNI++
Sbjct: 778 LTSASPEQVDVNILF 792
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 105 SVFFRNYFRQS*TDRRQHYLW 43
SVF +N++ S R YLW
Sbjct: 2204 SVFLQNFWLSSLNGRSWSYLW 2224
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 90 FEKKQTLTFSWNITRQNIVFTGW 158
F T TFS ++T + VF GW
Sbjct: 490 FRVPVTDTFSLDVTNVDDVFYGW 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,866
Number of Sequences: 5004
Number of extensions: 17904
Number of successful extensions: 52
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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