Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i14
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    28   1.4  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    28   1.4  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    26   5.6  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.8  

>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 448 DTAMLARILSTFNLL*LSIPPNSDKNIVFFVVSLLQEDKYSHKISMSCSS 299
           D  ++ R L   NLL  S  PNSD  I  F +S   ED   + +  +C +
Sbjct: 147 DNGIVHRDLKPENLLYRSKDPNSDLLIADFGLSHFYEDSQYYMLMTACGT 196


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 421 STFNLL*LSIPPNSDKNIVFFVVSLLQEDKYSHKISMSCSSC 296
           ST   + L +PP    N    ++SL++ D+  H     C SC
Sbjct: 185 STATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSC 226


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 312 IDILCEYLSSCNNETTKNTIFLSLFG-GMESQRRLKVLSILASMAVSASSTPVLLAVGVW 488
           IDI  + LS+  ++ +KN  FLS F  G+E +  + ++ +L+++    S + V     V+
Sbjct: 70  IDIAIKALSADKDDASKNNTFLSTFDPGVEYRVSIGLMLLLSALIGFCSESIVTSVKSVY 129


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 226 IISIATTNCLFVGAVRP 176
           + ++  +NCLF+G VRP
Sbjct: 388 LAAVTVSNCLFLGVVRP 404


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 315 DILCEYLSSCNNETTK-NTIFLSLFG 389
           D  CEY   CN++ T    IF+  FG
Sbjct: 287 DPQCEYFDDCNSDQTAFKGIFMQSFG 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,991
Number of Sequences: 5004
Number of extensions: 53116
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)