Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i14
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    29   2.5  
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    29   3.3  
05_05_0148 - 22729469-22730116,22730215-22730589                       29   4.4  
02_02_0025 + 6183328-6186127,6186265-6186623                           28   5.8  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   7.7  

>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +3

Query: 504 CSSPQSLQLAENLIRDHFYLNTKNQKELRMLANTAPQFIS 623
           C+    LQL+E L+RD  Y + K  K LR LA  AP+F+S
Sbjct: 39  CTFDDWLQLSELLVRDPLY-HVKLSKMLRDLA--APRFLS 75


>12_01_0672 +
           5731288-5731356,5732032-5732117,5732634-5732724,
           5732886-5732935,5733339-5733408,5733508-5733617,
           5733943-5734463,5734856-5734949,5735095-5735225,
           5735241-5736274,5736383-5736457,5736615-5737104,
           5737375-5738009,5738166-5738378
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 54  NSEISPKSTKMSLSDLKHSLRKYEFPVCAQEALVRI 161
           NS+ +P     S  D+KH  RK+   V A++  + I
Sbjct: 698 NSQAAPNQQNQSAGDIKHDKRKWALEVLARKNAISI 733


>05_05_0148 - 22729469-22730116,22730215-22730589
          Length = 340

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 550 SRIRFSASCRDCGDEQPVCWSQTPTASNTG-VLEADTAMLARILSTFNLL*LSIPPN 383
           S   FS S       QP+    + T+S++G +LE  +  L R+ ST +L  +++PP+
Sbjct: 76  SNAAFSYSSAPACQLQPLPPVSSSTSSSSGDLLEFSSGTLRRVFSTGDLQAMNVPPS 132


>02_02_0025 + 6183328-6186127,6186265-6186623
          Length = 1052

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 504 CSSPQSLQLAENLIRD---HFYLNTKNQKELRMLANTAPQFISNFITAVTELYVHDL 665
           C   +SL + ENL+     HF +N ++ KEL + +N     I +F  ++   Y+ DL
Sbjct: 583 CVLLESLHMEENLLVGSIPHFLMNLRSIKELDLSSNNLSGSIPDFFASMN--YLKDL 637


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 387 GGMESQRRLKVLSILASMAVSASSTPVLLAVGVWLQQT-GCSSPQSL 524
           GG   Q + KV SI+  +     +TPV +AVGV +      SSP +L
Sbjct: 284 GGCIVQAKFKVRSIVTMVLFFCLTTPVGIAVGVGISSVYNESSPTAL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,294
Number of Sequences: 37544
Number of extensions: 313809
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)