Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i10
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   3.4  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 199 CYLFWRVNYIESRCWVRGCIIIAKA 273
           CYLF R +Y E    ++ CII A A
Sbjct: 152 CYLFIRKDYYEETVMMQKCIIQAYA 176


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 ANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETC 386
           +N  +  PS+P  +    PT    SVS +   VETC
Sbjct: 101 SNYASNVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 LTLSTLKSNILK*FQDFSAINNVD*RRILGLCYLFWRVNY 225
           + +S++ + +L  F    A+     R  + LC+ FWR++Y
Sbjct: 106 IVISSILAQVLLFFMTTGAVR----RYSMMLCFFFWRISY 141


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 252 MHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKI 371
           +HHN      +KD G  S    T   KP+K+  +V + ++
Sbjct: 557 IHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESKRL 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,529
Number of Sequences: 5004
Number of extensions: 38959
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)