Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14i09
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 1.1
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 3.4
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 4.5
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 4.5
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 24 6.0
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 24 6.0
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 24 6.0
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 24 7.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 7.9
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 24 7.9
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 1.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 318 HFSCS*RTGSKSVESFVCSRISLKASSERQRHDQQIPHRF 199
H++C + K V + S+ S ASSE ++ + +IPH F
Sbjct: 438 HYTCHKKCYPKVVTKCI-SKSSDSASSEYEKINHRIPHHF 476
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.0 bits (52), Expect = 3.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 23 DKATYNKSGLSSI*RNCNEQAPEPGRHCSD-GESAPELRRRRQKILAS**REMRRYTHRQ 199
+K YN+SGL+ R E+ E R + E EL+R +++ A+ ++R T RQ
Sbjct: 18 EKKAYNRSGLADAQRTPYEKRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIR--TRRQ 75
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 223 RSANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 92
+S + S + + HF L ++FL + F S + SSW
Sbjct: 53 KSPDESTLTDTIVVRHFPDLVMEFFLPEAYPFNSPPTFFLKSSW 96
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 15 IYLTKQHITKVVCHQYKEIAMNKPLN---QEDIAAMENQL 125
+Y T + I K + K +A+N PLN + IA M+N L
Sbjct: 368 LYNTSKDIIKFISVIRKGLALNIPLNIRPPQRIAVMDNPL 407
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -3
Query: 126 GADS--PSLQCLPGSGACSLQ 70
GAD +LQC+ G GAC Q
Sbjct: 95 GADEVDDNLQCIKGGGACLFQ 115
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 162 LASIFCRLLRNSGADSPSLQCLPGSGACSLQFL 64
++S+ RN SP+L + G G ++QFL
Sbjct: 304 VSSVLPLTFRNFLGSSPTLDAMVGLGTSAVQFL 336
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 194 GVYSVAFHVINLPVFSVVFYAIPELILHRCNVFLVQGLV 78
G+++ A +++L + FY IP IL + V L+
Sbjct: 449 GIFTAAVVILSLYCLTDAFYYIPNAILSAVIIHAVTDLI 487
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 347 FSNYKFLFFDIFRVRSALVPSPSNLLFVVGF 255
FSN K +F+D++ + + + +P L +GF
Sbjct: 177 FSNRKKMFYDLWHLITDSLENPKQLWEKLGF 207
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 191 VYSVAFHVINLPVFSVVFYAIPEL 120
+ + F IN+ VFS+V Y + L
Sbjct: 621 IVDLPFRFINISVFSIVLYFLTNL 644
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 340 IINFYSSTFFVFVAHWF 290
++N+Y ST F A+W+
Sbjct: 106 MLNYYQSTSHTFTAYWW 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,796
Number of Sequences: 5004
Number of extensions: 31876
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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