Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i07
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   6.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 392 NIFKLFNKNPVFTNFALNRDSDEILVPSQ 306
           NIF+L    P+ T    +R  +EIL+  +
Sbjct: 267 NIFELVTVEPILTERPSDRQRNEILLSDE 295


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 287 TSNHIEAFSYSFI 249
           + NHIE F Y+FI
Sbjct: 557 SENHIEWFDYAFI 569


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 459 MELSSKKFKNVIENIFSSEQNSYNVVLATI 548
           +E   KKF  V EN   +E+N+ ++V A +
Sbjct: 63  VECMMKKFNVVDENGNFNEKNTRDIVQAVL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,917
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)