Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i05
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    29   0.40 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.2  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.1  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   2.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.6  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 279 PIMANPKRLHYLMRKAMKNLKRKN 350
           PI ANPK L + +  A KNLK K+
Sbjct: 860 PISANPKALSFALTYAKKNLKDKS 883


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -1

Query: 401  LSQNLFYGLLVS--AELVRIFSLQIFHRLS-HQVMEPLWIGHYRPARPLSCLSLSQERFQ 231
            LS  +FY       A ++R + + ++H    H  + P ++    P      LSL    FQ
Sbjct: 1246 LSSAIFYSAWNQCIAGIIRRYPIDVYHINDYHGALAPCYL---LPNVIPCVLSLHNAEFQ 1302

Query: 230  GCYS*LQQSCLN*ICFVIGISTVINT 153
            G +    Q+  N +C V  IST I T
Sbjct: 1303 GLWPLRTQAEKNEVCAVYNISTKICT 1328


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 236 FQGCYS*LQQSCLN*ICFV 180
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 236 FQGCYS*LQQSCLN*ICFV 180
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 236 FQGCYS*LQQSCLN*ICFV 180
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 294 PKRLHYLMRKAMKNLKRKNPNQLSRN 371
           PK    L +K  KNL RK  N+L RN
Sbjct: 169 PKPSCPLFKKMQKNLSRKLDNELERN 194


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 236 FQGCYS*LQQSCLN*ICFV 180
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 212 EVTNNIPENAPEKEKDMKEDAPAD 283
           E T N PE +P +   +K D PA+
Sbjct: 37  EDTTNDPERSPSERPSLKIDIPAN 60


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 314 QVMEP-LWIGHYRPARPLSCLSLSQ 243
           Q++E  LW+  Y P++   C + SQ
Sbjct: 318 QILEKGLWVSKYAPSKTQDCCAFSQ 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,722
Number of Sequences: 5004
Number of extensions: 29520
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)