Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i05
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639...    28   3.7  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    28   5.0  
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811...    27   6.5  
09_02_0115 + 4413714-4414475                                           27   8.7  
07_01_0670 + 5030971-5032698                                           27   8.7  
02_01_0408 - 2972240-2975380                                           27   8.7  
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504           27   8.7  
01_01_1229 + 9932535-9932594,9933018-9933095,9933177-9933228,993...    27   8.7  

>09_06_0086 -
           20763085-20763162,20763233-20763286,20763287-20763975,
           20764173-20764324,20764404-20764604,20764920-20765064,
           20765552-20765588,20765880-20765965,20766093-20766329,
           20766501-20766609,20767025-20767135
          Length = 632

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 160 LTRIASLTITAVRARSNNRTACRLLLSGVCSTIICFKQTK 41
           + +I +  +  +R R     + R LL  + + IICF++TK
Sbjct: 1   MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETK 40


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 182 QNKFNSNMTVEVTNNIPENAPEKEKDMKEDAPADNGQSK 298
           +NK       E +NN+ +N   +E ++ ED+    GQS+
Sbjct: 356 KNKTKDIKRKEPSNNVEDNLGNEEDEIMEDSETTGGQSE 394


>01_06_1577 -
           38379951-38380167,38380349-38380543,38380919-38381191,
           38381281-38381455,38381925-38382035,38382120-38382390,
           38382990-38383139,38383242-38384246
          Length = 798

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 182 QNKFNSNMTVEVTNNIPENAPEKEKDMKEDAPAD-NGQSKEA 304
           + KF+ N   +   +  E AP KEK+  +D   D NG+++++
Sbjct: 101 EEKFSENTVEKPVESSEEKAPPKEKEESKDTFDDANGKTEQS 142


>09_02_0115 + 4413714-4414475
          Length = 253

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 400 RRSISLSIFAHSFVTVDIPILL 465
           RR +SL +F+HS  +  +P+LL
Sbjct: 15  RRRLSLRLFSHSSASASLPLLL 36


>07_01_0670 + 5030971-5032698
          Length = 575

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 200 NMTVEVTNNIPENAPEKEKDMKEDAPADNGQSKE 301
           N T E      E   E+E+D +E++ AD GQ  E
Sbjct: 542 NATKEEEEEEEEEEEEEEEDSQEESSADTGQFTE 575


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -1

Query: 407 LRLSQNLFYGLLVSAELVRIFSLQI----FHRLSHQVMEPLWIGHYRPARPLSCLSLSQE 240
           L LS NL  G  +  ELV   SL +    F+RL+  + E   +    PARPL  L++S  
Sbjct: 109 LNLSYNLLSGA-IPQELVSSRSLIVIDISFNRLNGGLDE---LPSSTPARPLQVLNISSN 164

Query: 239 RFQG 228
            F+G
Sbjct: 165 LFKG 168


>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
          Length = 485

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 176 QLQNKFNSNMTVEVTNNIPENAPEKEKDMKEDAPADNGQSKE 301
           QLQ + NS++ +E        A E+E+D +E++    G   E
Sbjct: 48  QLQEQMNSSIRMETDEPATMAAGEQEEDEEEESSGGGGAEPE 89


>01_01_1229 +
           9932535-9932594,9933018-9933095,9933177-9933228,
           9933377-9933648,9934016-9934246,9934408-9934554
          Length = 279

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 335 IFHRLSHQVMEP-----LWIGHYRPARPLSCLSLSQERFQGCYS*LQQS 204
           +FH LS     P     LW+G +RP+  L    L++++  G  + LQQS
Sbjct: 125 VFHVLSGMWKTPAERCFLWLGGFRPSELLKLEPLTEQQLSGIAN-LQQS 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,348,397
Number of Sequences: 37544
Number of extensions: 182794
Number of successful extensions: 529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)