Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i05
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 282 IMANPKRLHYLMRKAMKNLKRKN---PNQLS 365
           I+ N KR++   R  +KN+ + N    NQLS
Sbjct: 18  ILKNDKRIYLSPRTPIKNVYKNNIETKNQLS 48


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 392 NLFYGLLVSAELVRIFSLQIFHRLSHQVMEPLWI 291
           N    ++ S+ ++ +  L   HR   + + P WI
Sbjct: 330 NCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWI 363


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 392 NLFYGLLVSAELVRIFSLQIFHRLSHQVMEPLWI 291
           N    ++ S+ ++ +  L   HR   + + P WI
Sbjct: 330 NCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWI 363


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 203 CLN*ICFVIGISTVINTNRKPNDHRR 126
           C   + F+IG    I+   K ND++R
Sbjct: 9   CFARLFFIIGFFNAISGAIKGNDYQR 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,251
Number of Sequences: 438
Number of extensions: 1757
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)