Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i04
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   4.4  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   7.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.7  

>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 193 ELLPSQSRCVVF-FLKCTLSQIHRNNILGTESSYFSIKKLLKSYCI*FRYL 44
           +L P Q+    F FL CTL Q+H+    G  SS   I  L+ S  +  R L
Sbjct: 130 QLKPDQTSYPKFNFLNCTLGQVHKT---GLGSSAAMITSLIGSLFLSLRRL 177


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 625 HLLCRTCGALD 593
           H+LC TCGA+D
Sbjct: 104 HVLCTTCGAID 114


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 254 YLYAVLVRKEIDKNNTKALLRVTAIAVALRCFFFKMHFVSNSQKQYPRNRIFLFFYKKIT 75
           +L+ +L  +     N   LL    + +     F   HF  +    Y  +R+F  +YK +T
Sbjct: 422 WLFRMLNLRIASMGNNHTLLE-KCLLITNHATFLVSHFSWDVSLAYQLSRLFQLYYKILT 480

Query: 74  EI 69
           +I
Sbjct: 481 KI 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,785
Number of Sequences: 5004
Number of extensions: 50793
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)