Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14i01
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   194   5e-50
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   194   5e-50
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    30   1.1  
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    29   1.9  
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    29   1.9  
U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon gu...    29   2.5  
U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon gu...    29   2.5  
AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr pro...    29   2.5  
Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kin...    28   5.7  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  194 bits (472), Expect = 5e-50
 Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 2/136 (1%)
 Frame = +3

Query: 141 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 320
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 321 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 494
           KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K     + +FEE
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120

Query: 495 RYKSGKNKWFFQKLRF 542
           RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  194 bits (472), Expect = 5e-50
 Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 2/136 (1%)
 Frame = +3

Query: 141 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 320
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 321 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 494
           KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K     + +FEE
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120

Query: 495 RYKSGKNKWFFQKLRF 542
           RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 184 LKTSTTLPGFIILPILEGLLVSHKFNILVRF*LIFKPILW 65
           +K ++ L GF+IL   +G + +H    + RF  +F PIL+
Sbjct: 72  MKNNSHLIGFVILICYDGAMQAHALITVNRFFAVFYPILY 111


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 147 KIMKPGKVVLVLSGRYAGRKAIVVK 221
           K + PG V++VL+GR+ G++ + +K
Sbjct: 69  KTLTPGTVLIVLAGRHKGKRVVFLK 93


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 419
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 419
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 419
           AG++R   ++   +  NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform a protein.
          Length = 476

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 240 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 401
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402

Query: 402 --DFS-FEKFSAKDLKDP 446
             D S F+ F  +DL  P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420


>U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform b protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 240 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 401
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402

Query: 402 --DFS-FEKFSAKDLKDP 446
             D S F+ F  +DL  P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420


>AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr
           protein kinase protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 240 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 401
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395

Query: 402 --DFS-FEKFSAKDLKDP 446
             D S F+ F  +DL  P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413


>Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical
           protein F59A1.4 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = -3

Query: 202 RPAYRPLKTSTTLPGFII-LPILEGLLVS------HKFNILVRF*LIFKPIL 68
           R  +R L   T +P F++ LP+   LL        HK +++++F  +F PIL
Sbjct: 243 RQFFRALVVQTLIPIFLLYLPLATMLLAPILMANLHKIDVIIQFCFVFYPIL 294


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 123 TNNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 230
           T N  ++ K  K G    V+SGRY G   ++V+  D
Sbjct: 463 TLNAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 123 TNNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 230
           T N  ++ K  K G    V+SGRY G   ++V+  D
Sbjct: 463 TLNAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498


>Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kinase
           protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 240 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 401
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+     P R TV  
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344

Query: 402 --DFS-FEKFSAKDLKDP 446
             D S F+ F  +DL  P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
 Frame = +2

Query: 257 ACFRRWYRQVPPESAQE--DGKE*NPQEVQDKAFREGCKL*SLDANTLYS*LQL*KIQRK 430
           ACF R+  +      QE  D ++   ++V+   F   C+    D+NT+++  +  ++  K
Sbjct: 143 ACFNRYLTECLTGLRQEIQDAQKHMKEQVETNIFCPVCRAQLTDSNTIHNYRENVQLMIK 202

Query: 431 RPERPCKT*EAAFQHASTF*REVQK----WEEQ 517
             ++  KT +   + +ST   +VQK    W E+
Sbjct: 203 NCKKNQKTLKNKKRRSSTTTEDVQKTIKRWHEE 235


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 207 PCDPRTGHLRPALLYPASLSYPS 139
           P D  TGH RPAL  P     PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 419
           AG++R    V   +  N+  KR KI    +   YNHL+P   T+D+S  K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
           protein F20B10.1 protein.
          Length = 1180

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 381 SSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQR 268
           SS YS +  +  L W     YS   SCA++ G+C + R
Sbjct: 607 SSWYSTRSDKHGLQWGEAPPYSRMCSCAIN-GSCLHNR 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,854
Number of Sequences: 27780
Number of extensions: 268978
Number of successful extensions: 831
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)