Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h14
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    29   0.32 
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    26   3.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   4.0  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   5.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   5.2  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   5.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   6.9  

>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
 Frame = +3

Query: 78  DLKIRKKIKDDSAKNVLTDVSVKEPK-RKSRDFCCRT-------RTDTGRR--SEKPNIN 227
           DL ++ K K    KNV  +  +K+    + R F  ++       R++  RR   EK +  
Sbjct: 38  DLILKAKTKKHFYKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSEEKRRIQQEKEDAK 97

Query: 228 IRDSLEISHRRETNQGLKNMQIKNSKTKNDDLVNRAHIKHFV 353
           ++  LEI  +++  +  +NM  K  KTK    + R  I H +
Sbjct: 98  VQKRLEIEKKQKDREQTRNMLSK--KTKRGQPIMRNQINHLL 137


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +3

Query: 18  NIDNXNEFYDVTLQQDKRTTDLKIRKKIKDDSAKNVLTDVSVKEPKRKSR 167
           N++  ++ YD+ L  +  + D +I +  +  + +++   +S+K+   KSR
Sbjct: 385 NVEFLDDVYDMLLGSNSDSIDSRINRHEEPSTTEDLTLTLSIKDNISKSR 434


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 DTGRRSEKPNINIRDSLEISHRRETNQGLKNMQIKNSKTKNDDL 323
           D+G  SE  N ++RD++ I   R+    L  +Q ++ + +N  L
Sbjct: 48  DSGGSSESSNEDMRDNIPIVSGRKKTVRLNRLQRESEQFENSAL 91


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 237 YLEYLYLAFQNASLYQFESYNKSHEIF 157
           YL Y  L   N  LYQ    N +HE F
Sbjct: 125 YLPYDILTIGNHELYQASVSNNTHEYF 151


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/71 (21%), Positives = 30/71 (42%)
 Frame = +3

Query: 285 MQIKNSKTKNDDLVNRAHIKHFVGDSCKLPDPLERDKQIRELLGLNWIHQSVGTTSKITK 464
           ++ +N    N+ +  R  ++    +     D   R +   ELL +  IH +      + +
Sbjct: 267 VESENKGLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVGMIHLNKSENRTVEE 326

Query: 465 MQSNSFGNIKE 497
           M+   FGN +E
Sbjct: 327 MKIGDFGNTEE 337


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = +3

Query: 108 DSAKNVLTDVSVKEPKRKSRDFCCRTRTDTGRRSEKPNINIRDSLEISHRRETNQGLKNM 287
           D+ K+V       E K KS       +      + K   N R  L   HR +     +  
Sbjct: 504 DAYKDVYEKQRKAEQKAKSNGVMNGNQRQFLGFTFKYRPNARKPLVGRHREKRQLRKEKP 563

Query: 288 QIKNSKTKNDDLVNRAHIK 344
           + KN+ TK  DL+  +H K
Sbjct: 564 EKKNNSTKQKDLITVSHNK 582


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 237 YLEYLYLAFQNASLYQFESYNKSHEIF 157
           YL Y  L   N  LYQ    N +HE F
Sbjct: 125 YLPYDILTIGNHELYQAAISNNTHEYF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,695
Number of Sequences: 5004
Number of extensions: 32571
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)