Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14h14
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 31 0.57
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 30 0.99
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 29 1.7
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 3.0
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 4.0
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 27 9.2
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 27 9.2
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 126 LTDVSVKEPKRKSRDFCCRTRTDTGRRSEKPNINIRDSLEISHRRETNQGLKNMQIKNSK 305
LTD +++ +RK + T +GRR +K N + RD ++S ++ + + K K
Sbjct: 480 LTDSALRRSRRKKKKSDGGVVTSSGRRVKKRNFDERDVPQVSRPHKSRKSRNDRSSKRKK 539
Query: 306 T 308
+
Sbjct: 540 S 540
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 345 HFVGDSCKLPDPLERDKQIRELLGLNWIHQSVGTTSKITKMQS 473
H G+S KLPD + + ++ L G+N + S T ++ ++ S
Sbjct: 653 HLFGNSLKLPDGIGNMRNLQVLTGINISNSSASTVPELGELTS 695
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 90 RKKIKDDSAKNVLTDVSVKEPKRKSRDFCCRTRTDTGRRSEK 215
RKKI+ D ++ D+SVK K+K R+ RR E+
Sbjct: 138 RKKIERDVSQGQKVDISVKGEKKKQRERMAEIEKVKKRREER 179
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 3.0
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Frame = +3
Query: 15 INIDNXNEFYDVTLQQDKRTTDLK--IRKKIKDDSAKNVLTDVSVKEPKRKSRDFCCRTR 188
INI N D + ++ + T K + K+++D + T + E K +DF +T
Sbjct: 1445 INI-NIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQKTTTENSNEQAIKEKDFRIQTL 1503
Query: 189 TDTGRR----SEKPNINIRDSLEISHRRETNQGLKNMQIKNSKTKNDDLVNRAHIKHFVG 356
+ ++K R + ++ N + Q++ S K+ V I+H+ G
Sbjct: 1504 EKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQVEESIEKHRQAVKEV-IEHYTG 1562
Query: 357 DSCKLPDPLERDKQIRE-LLGLNWIHQS 437
S ++P D+Q+R L + + +S
Sbjct: 1563 ISSQIPSGSAIDEQLRSYFLAIKAVEES 1590
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Frame = +3
Query: 138 SVKEPKRKSRDFCCRTRTDTGRRSEKPNINIRDSLE--------ISHRRETNQGLKNMQI 293
S K+ +KS + R+D G R +K ++D +E ++H+R ++ M
Sbjct: 680 SDKKDSKKSEMEDKKRRSDRGNRGDKDEKYLKDPMEDKKLDVSSVAHKRSSSASEDEMLN 739
Query: 294 KNSKTKNDDLVNRAHIKHFVGDSCKLPDPLERDKQIRELLGLNWIHQSVG 443
NSK D H + K D +E D++ + +G +S+G
Sbjct: 740 SNSKRSKHDAALECHER-------KDEDHIEEDRRDLDSVGSKSEKRSLG 782
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 197 CISSSPTTKVTRFSLRLLNRYIS*HVLCGIIFDFFSNFQ-ISCSFI 63
C SSS + RF + ++Y+S V+ G++F F+ N + CS I
Sbjct: 767 CTSSSLASD-ERFCRKCEDQYLSFCVMAGVVFGFWWNLKFFHCSVI 811
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.1 bits (57), Expect = 9.2
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 60 QDKRTTDLK-----IRKKIKDDSAKNVLTDVSVKEPKRKSRDFCCRTRTDTGRRSEKPNI 224
Q++RT DL+ ++K I KN+L EP+ S D+ T ++KP
Sbjct: 4 QERRTIDLEEGWAFMQKGIT--KLKNILE--GKPEPQFSSEDYMMLYTTIYNMCTQKPPH 59
Query: 225 NIRDSLEISHRRETNQGLKNMQIKNSKTKNDDLVNRAHIKHF 350
+ L +R + + +M + + + K+D+ + R +K +
Sbjct: 60 DYSQQLYDKYRESFEEYITSMVLPSLRDKHDEFMLRELVKRW 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,764
Number of Sequences: 37544
Number of extensions: 170796
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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