Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h12
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   1.3  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   2.3  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   2.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   4.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   6.9  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.9  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    24   9.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   9.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   9.1  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 100 NQNIKAAQNKFCDKQMSAGDVGTFSNG---SNIRKFTKNQGPGRPRKTGKIQSSREKDNI 270
           N+  K  +N+    + S+ DV   SN    +   K TK +       +   Q+ +++DN+
Sbjct: 228 NREEKYFENQLHLVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVSKTSQTDKDEDNL 287

Query: 271 KLSRSDIQRIKNM 309
             +++ + RIKN+
Sbjct: 288 DFTKNLLTRIKNL 300


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 243 YFSCFSWSS-WPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 88
           + SC ++ S W L    F ++R   + S + C  L + K I   F+I I H +
Sbjct: 17  FLSCCAFMSHWKLKDFSFRFLRMCGERSLVVCYPLKLLKQIRSLFSIAIGHLS 69


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 215 QEDQEKQEKYKALVKKITLNCHDLIY 292
           QEDQ+K+EK   L ++IT+    +I+
Sbjct: 13  QEDQDKREKIIRLSREITIQSKRMIF 38


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 217 GRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 363
           G+   T K QS  EKD  K++ +  + +K   +      L L+D N  N
Sbjct: 24  GKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 162 HIACTHLFVTKLILCRFNILISHFNCVSQKCLDN 61
           +IA   L ++ L LC   ++++    + QKC+DN
Sbjct: 537 NIAIPWLRLSGLALCHDPVIVTKLCRIGQKCVDN 570


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
 Frame = -3

Query: 237  SCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLF-----VTKLILCRFN--ILISHFNCVS 79
            S F++  W +I C+  Y  A+    H A   +F        +    FN  + +  FN ++
Sbjct: 1008 SLFTFDMWKMIICQSMYQLAVTLVLHFAGNSIFHYPSNTADMNTIVFNTFVWLQLFNEIN 1067

Query: 78   QKCLDNYKNFAFHKI 34
             + LDN  N  F +I
Sbjct: 1068 NRRLDNKLNI-FERI 1081


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 KDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTNLYPQHIYP 387
           K  + +S +++ R    +N+S    ++ + P R+  +   IYP
Sbjct: 323 KRGVNVSENEVMRAYKSVNDSIIEPISFIVPRRSESFQSDIYP 365


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 229  KTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTNL 366
            K  K+ +   KD++ + +  ++  ++  +E R + L L  PN+ ++
Sbjct: 1881 KLQKLNAKNSKDDLCIEQYLMKSERSFFHERRAIKLGLQKPNKLHV 1926


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 171 KCSHIACTHLFVTKLILCRFNILISHFNCVSQKCLDN 61
           KCS+   T   V+ L     ++LIS  N +SQK   N
Sbjct: 123 KCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLN 159


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 191 ENSQKIKGQEDQEKQEKYKALVKK 262
           E  +K+K ++++ K E+Y+ LV +
Sbjct: 11  EEQRKLKAEKERAKIEEYRGLVSR 34


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 164 EHFQMALI*ENSQKIKGQEDQEKQEKYKALVKKITLNCHDLIYKELKTCL 313
           E+    L+ ++ +KIK  E     EK  AL K+++    D+  KE+K+CL
Sbjct: 756 ENVNQTLVPQHEEKIKSFE-----EKLSALKKEMS----DVDLKEIKSCL 796


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 23   ILVAILWNAKFL*LSRHFCETQLKWEIKILKR 118
            +L A L  +KF+ LS +FC   L   I IL++
Sbjct: 940  LLAASLTLSKFMCLSNNFCMEHLPLLITILEK 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,590
Number of Sequences: 5004
Number of extensions: 34441
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)