Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h12
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155           30   0.96 
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    29   1.3  
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039...    29   2.2  
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818...    28   3.9  
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    28   3.9  
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572...    27   9.0  
01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274,657...    27   9.0  

>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
          Length = 361

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 213 PLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 88
           PL  CE S+ +   +  HI   +L++  +++C+  +L+ H N
Sbjct: 90  PLNTCELSFDQI--RRQHIPRVNLWIRHIVMCKVRVLVLHLN 129


>04_04_1093 + 30825722-30826168,30826457-30826608,30826926-30827048,
            30827240-30827384,30828032-30828093,30828373-30828586,
            30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
 Frame = +1

Query: 88   IKMGNQNIKAAQNKFCDKQMSAGDVGTFSNGSNIRKFT-----KNQGPGRPR-KTGKIQS 249
            +    Q  KA  ++F D ++ A      +  + +++F         G G    +T K+  
Sbjct: 758  LSQAEQEFKAQLDRFADVELDALCSSITALSARMKRFAHPAIGSAAGTGMSTWQTPKVGR 817

Query: 250  SREKDN-IKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 363
            S   D+ + L +S ++++ ++LNE   V LTL +P   N
Sbjct: 818  SHVSDSQMSLLKSSLEKL-SLLNEENNVKLTLREPELKN 855


>05_07_0132 +
           27903236-27903376,27903498-27903659,27903755-27903903,
           27903999-27904325,27905123-27905323,27906095-27906155,
           27906517-27906718,27906899-27907020,27907143-27907247,
           27907369-27907452
          Length = 517

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -1

Query: 344 ISVNITGLLSLSMF----LILCISDRDSLMLSFSRELCIFPVFL 225
           IS+N+  L  LS      L+LC S  D+L  +FSREL  + +++
Sbjct: 389 ISINLGPLEELSNLCKADLLLCESGGDNLAANFSRELADYIIYI 432


>03_02_0406 +
           8182870-8184262,8184376-8184452,8184809-8184920,
           8185064-8185071,8185633-8186217
          Length = 724

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 182 LI*ENSQKIKGQEDQEKQEKYKALVKKITLNCHDLIYKELK 304
           LI E +      ED E+ +  + L+  +  NCHD   +E+K
Sbjct: 654 LIPEVASMSSSSEDDEENDHSEPLMASVEHNCHDQSSEEMK 694


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 277 SRSDIQRIKNMLNESRPVMLTLMDPNRTNLYP 372
           SR+     K +L+ SRP     +DPNR+NL P
Sbjct: 539 SRNGSTSRKALLSSSRPSSGDPIDPNRSNLIP 570


>06_03_0136 +
           17056256-17056420,17056864-17057036,17057272-17057297,
           17057524-17057922,17058190-17058265,17058432-17058507,
           17058930-17059013,17059446-17059570,17060146-17060389,
           17060968-17061031,17061218-17061726
          Length = 646

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 220 RPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRP 327
           +PR    I ++R++ N+K ++S++ R +N   +  P
Sbjct: 399 KPRDNAAINNARKQHNMKRNQSNVNRGQNRYYQKTP 434


>01_01_0842 -
           6571432-6571487,6571586-6571675,6571967-6572274,
           6572872-6573037,6573659-6573841,6574321-6574426,
           6574537-6574701,6575202-6575262,6577147-6577208
          Length = 398

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 109 IKAAQNKFCDKQMSAGDVGTFSNGSNIRKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSD 288
           +K +Q+     ++ +   GT    SN        GPG    +  I S+   DN K+SR D
Sbjct: 37  MKDSQDIQSPTELQSSAQGTNEVQSNQPNPMATDGPGGDSGSLSIASN---DNRKVSRED 93

Query: 289 IQRIKNML 312
           I+ ++N++
Sbjct: 94  IELVQNLI 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,236
Number of Sequences: 37544
Number of extensions: 186274
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)