Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h12
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   0.86 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   3.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 371 GYKLVLFGSISVNITGLLSLSMFLILC 291
           GY L+  GS+ VN   L+ L   + +C
Sbjct: 66  GYVLIHIGSVPVNNINLILLQNIIDIC 92


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 377 CXGYKLVLFGSISVNITGLLSLSMFLILCI 288
           C G    L   +S+++T L S  +F ILCI
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCI 38


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 377 CXGYKLVLFGSISVNITGLLSLSMFLILCI 288
           C G    L   +S+++T L S  +F ILCI
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCI 38


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 377 CXGYKLVLFGSISVNITGLLSLSMFLILCI 288
           C G    L   +S+++T L S  +F ILCI
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCI 38


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 377 CXGYKLVLFGSISVNITGLLSLSMFLILCI 288
           C G    L   +S+++T L S  +F ILCI
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCI 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  IKMGNQNIKAAQNKFCDKQMSAGDVGTFSNG 180
           +KMG +NIKA   +F  +  +A  +G    G
Sbjct: 435 MKMGKRNIKAQVKRFRMETKAAKTLGIIVGG 465


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 189 YIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 88
           Y R +     +ACT  F+  +I+  F+ L S F+
Sbjct: 37  YFRDLQPLFKLACTDTFMEGVIVLAFSGLFSVFS 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,848
Number of Sequences: 438
Number of extensions: 2454
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)