Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h08
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   3.7  
03_05_0745 - 27346266-27346355,27346990-27347082,27347315-273474...    28   4.9  
05_03_0246 + 10895627-10895829,10897012-10897078,10898258-108984...    28   6.5  
02_05_1051 + 33763485-33763582,33763907-33763978,33764116-337642...    28   6.5  

>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 286 THLRRGLIERKVKFFPAVFEPYKVLAQIFHSLHYNTFHLDSAYNLSLKSASYIYVFFNDY 465
           T  +  L+E++VK     F  ++  A   HS+H  +  L+S  + S   A   +    D 
Sbjct: 550 TTSKNQLLEQEVKDLSDKFTEHQEQA---HSVHERSLELESLLHTSKSDAEVAHTRTQDL 606

Query: 466 ENETRT 483
           ENE  T
Sbjct: 607 ENELNT 612


>03_05_0745 -
           27346266-27346355,27346990-27347082,27347315-27347404,
           27347753-27347804,27347894-27348000,27348209-27348313,
           27348383-27348512,27348861-27348991,27349348-27349449,
           27349557-27349655,27349771-27350040
          Length = 422

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +1

Query: 466 ENETRTMALRRHDTIIRDVYMNMQELQRGPIVAFYTGKTNPAV 594
           E     +A+ RH  ++++   ++  L+R  ++ FY G+ + ++
Sbjct: 110 EERDEQVAIERHFELLKEFPRDLMSLKRAQLICFYMGRPDTSL 152


>05_03_0246 +
           10895627-10895829,10897012-10897078,10898258-10898433,
           10898450-10898583,10900165-10901594
          Length = 669

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 295 RRGLIERKVKFFPAVFEPYKVLAQIFH 375
           R GL+E  + FF  +F  YKV+  + H
Sbjct: 536 RAGLVETGLDFFEELFTEYKVIPMMVH 562


>02_05_1051 +
           33763485-33763582,33763907-33763978,33764116-33764202,
           33764923-33765001,33765336-33765386
          Length = 128

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 130 DIPPNPFSTMSSAKFADIIRETIKRTEGIIIFVEELLSFEEITAKDKLGTPFTHLRRGLI 309
           D  P+P +T SS      IR T+K +  I ++V   +    ++ KD     ++ + R L 
Sbjct: 24  DAMPSPTTTSSSRLSVGFIRTTVKWSSEISLYVRLSMMITGVSLKDDGKDRWSVMYRPLQ 83

Query: 310 ERKVKFFPAVFEPYK 354
             + K    V+E  K
Sbjct: 84  TFRNKMGEMVYEMTK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,566
Number of Sequences: 37544
Number of extensions: 242129
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)