Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h08
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    30   1.1  
AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical...    28   4.4  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    27   7.7  

>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 KVLAQIFHSLHYNTFHLDSAYNLSLKSASYIYVFFNDYENET 477
           KV  Q+  SL + T  +  A  L + +  +IY FFN Y++ET
Sbjct: 232 KVQNQLLKSLVFQT--IIHAIMLGIPNCMFIYAFFNGYKDET 271


>AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical
           protein F52C6.13 protein.
          Length = 148

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 228 NENYYTFGTFDCFPYYVSK 172
           NEN Y+   F CFP+++S+
Sbjct: 33  NENCYSTINFSCFPFFISR 51


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 379  LHYNTFHLDSAYNLSLKSASYIYVFFNDYENETRTMALRRHDTII 513
            LHY    + S +N S  S   +  FFN++   T  +A+   D++I
Sbjct: 1076 LHYALGFVPSMFNFSTVSVPSLKTFFNNFGLYTPALAITFTDSMI 1120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,397,508
Number of Sequences: 27780
Number of extensions: 241744
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)