Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h04
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   2.3  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   4.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    23   4.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    23   7.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   7.1  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    22   9.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    22   9.4  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    22   9.4  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    22   9.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -2

Query: 144  FYLDWEACLCSLSRNYLI-*EHFHHNHNLLVRC 49
            FY  W  C+  + R Y I   H +  H  L  C
Sbjct: 1251 FYSAWNQCIAGIIRRYPIDVYHINDYHGALAPC 1283


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 80  SITITICWSDVWLVVPSCWN 21
           ++ IT+  SD+WL +  C N
Sbjct: 250 AVFITMDTSDIWLALSKCLN 269


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 172 FRFLNIIALFLSRL 131
           F FLN +A++LSRL
Sbjct: 541 FSFLNFVAIWLSRL 554


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 220 IFKNVYYYE 194
           +F+NVYYYE
Sbjct: 79  VFQNVYYYE 87


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 132 SLDRKSAIIFKKRNNFTFIYLS 197
           SLDRK+   F  RNNF   ++S
Sbjct: 37  SLDRKALDSFMVRNNFKKRFVS 58


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 130 GGLFMLPLEKLSYLGTLPSQSQFVGQM 50
           GGL +    KL +LG++P   +F G+M
Sbjct: 215 GGLTLSEKYKLPFLGSVPIDPKF-GEM 240


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 223 LIFKNVYYYER*INVKLFRFLNIIALFLS 137
           ++F+N+Y Y+  +    F   NII +F S
Sbjct: 420 ILFRNLYNYKELLAFAPFVVQNIIIVFSS 448


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 175 LFRFLNIIALFLSRLG 128
           LFR L+ +AL++ R+G
Sbjct: 224 LFRVLHAVALYIPRVG 239


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 153 LHFFYLDWEACLCSL 109
           LH  ++DW   LCS+
Sbjct: 54  LHITFIDWIPFLCSI 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 939,392
Number of Sequences: 5004
Number of extensions: 16580
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)