Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h04
         (235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine r...    26   4.1  
AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    25   9.5  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    25   9.5  

>AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine
           receptor, class z protein56 protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 220 IFKNVYYYER*INVKLFRFLNIIALFLSRLGGL-FMLPLEKLSYLGT 83
           +FKN Y+Y   +    +  L  I L +S L  L  M+ + KLS+L +
Sbjct: 176 MFKNAYWYNPELLFWSWHMLGYILLIISALLYLPIMISVRKLSHLAS 222


>AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical
           protein H05C05.1b protein.
          Length = 219

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 87  EHFHHNHNLLVRCMASGTI 31
           +H HHNHN L +    G I
Sbjct: 60  QHHHHNHNQLQKSATIGHI 78


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 87  EHFHHNHNLLVRCMASGTI 31
           +H HHNHN L +    G I
Sbjct: 564 QHHHHNHNQLQKSATIGHI 582


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 150 HFFYLDWEACLCSLSRNYLI*EHFHHNH 67
           H   LD EAC+ SL  N L    F H+H
Sbjct: 95  HLEDLDIEACIQSLIPNVLHNPGFKHSH 122


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 150 HFFYLDWEACLCSLSRNYLI*EHFHHNH 67
           H   LD EAC+ SL  N L    F H+H
Sbjct: 164 HLEDLDIEACIQSLIPNVLHNPGFKHSH 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,146,118
Number of Sequences: 27780
Number of extensions: 91553
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)