Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h02
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.7  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    25   8.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.7  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 315 YINHVREALPKMLEAKSTQKPKSSKKHVPIVID--ASETTDDRIGRIGPKLVVFDASTGT 488
           Y+++   + P ++   S+  P   K + P+ +    + T +DR+  + P +  FD+S  T
Sbjct: 293 YLSNPSNSNPAVMSL-SSNFPSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTT 351


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 363 STQKPKSSKKHVPIVIDASETT 428
           ST  P+SSK   PI+ D ++TT
Sbjct: 216 STTSPESSKVSEPIIQDNTQTT 237


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 364 QHKSRSLRRNTSQS*LTPAKPQTTELVASDRSWLFL 471
           +HK RS+R+  S     P   +T ELV  DR++ FL
Sbjct: 641 RHKERSVRKVFS-----PLLGETFELVREDRNYRFL 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,864
Number of Sequences: 5004
Number of extensions: 48537
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)