Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h02
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    33   0.12 
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    33   0.12 
Z99281-9|CAB16515.1|  242|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine re...    27   7.9  

>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 171 GMMNVFKSMF-GVCSGSAEKGEVHDTIKRVFGNDMVLKDNGDRQSQRSKYINHVREALPK 347
           G+ N F  MF    SG  EK EV   ++    ++++++    R ++  KY+  + E  P 
Sbjct: 48  GLFNTFFGMFVSSNSGEKEKTEVSGEVQVQEDDEIIVEGTTRRVAENKKYMIFLNEDAPV 107

Query: 348 MLEAKSTQKPKSSKKHV 398
              A S +     +KHV
Sbjct: 108 RANAGSEENEVIIEKHV 124


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 171 GMMNVFKSMF-GVCSGSAEKGEVHDTIKRVFGNDMVLKDNGDRQSQRSKYINHVREALPK 347
           G+ N F  MF    SG  EK EV   ++    ++++++    R ++  KY+  + E  P 
Sbjct: 48  GLFNTFFGMFVSSNSGEKEKTEVSGEVQVQEDDEIIVEGTTRRVAENKKYMIFLNEDAPV 107

Query: 348 MLEAKSTQKPKSSKKHV 398
              A S +     +KHV
Sbjct: 108 RANAGSEENEVIIEKHV 124


>Z99281-9|CAB16515.1|  242|Caenorhabditis elegans Hypothetical
           protein Y57G11C.14 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/74 (18%), Positives = 38/74 (51%)
 Frame = +3

Query: 264 NDMVLKDNGDRQSQRSKYINHVREALPKMLEAKSTQKPKSSKKHVPIVIDASETTDDRIG 443
           N M+  +   R+++R + +  ++  +PK ++    +KP+SS+K++ ++       D+ + 
Sbjct: 31  NRMMDNEKMIREARRMEEVQQLKMQIPKPVD----KKPRSSEKNLKLISCEETCMDETLK 86

Query: 444 RIGPKLVVFDASTG 485
                 ++F+   G
Sbjct: 87  NSSKPRIIFNKQLG 100


>AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical
           protein Y102A5C.4 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 174 MMNVFKSMFGVCSGSAEKGEVHDTIKRVFGND 269
           M++  + +F VCS  ++ G + DT++ +  ND
Sbjct: 362 MIHHVQDVFAVCSNESKAGILKDTLEEIMTND 393


>AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine
          receptor, class h protein8 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 19 LIFNIISLFYEYTNYLILHVF 81
          LIF   S F +Y  YL+LH+F
Sbjct: 36 LIFRTPSNFSDYRKYLVLHIF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,710
Number of Sequences: 27780
Number of extensions: 271076
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)