Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14h02
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.4  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 193 DLKTFIIPHEFKARL 149
           D+ TF++PH+F  R+
Sbjct: 88  DILTFVVPHQFIKRI 102


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 578 RVHAGGRPDRCE 543
           RVH G RP  CE
Sbjct: 58  RVHTGERPYACE 69


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 442 PILSSVVSLASITIGTCFFEDFGFCVDFAS 353
           P +S V S+  + +GTCF   F   +++A+
Sbjct: 275 PKISYVKSI-DVYLGTCFVMVFASLLEYAT 303


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 442 PILSSVVSLASITIGTCFFEDFGFCVDFAS 353
           P +S V S+  + +GTCF   F   +++A+
Sbjct: 275 PKISYVKSI-DVYLGTCFVMVFASLLEYAT 303


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 442 PILSSVVSLASITIGTCFFEDFGFCVDFAS 353
           P +S V S+  + +GTCF   F   +++A+
Sbjct: 214 PKISYVKSI-DVYLGTCFVMVFASLLEYAT 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,946
Number of Sequences: 438
Number of extensions: 3475
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)