Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14g21
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   0.37 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    23   7.9  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.9  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    23   7.9  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 149  PRYCIID*CVSTCSNFNMLM*HECSQLMTCKQCIEIHQSTSDSLNKRIFI 298
            PR  I+D C S   + + L+  +  Q ++C   I  HQ +   L  RI +
Sbjct: 1254 PRLLILDECTSALDSKSSLLLEKTIQNLSCTVLIITHQPSLMKLADRIIV 1303


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 239 KQCIEIHQSTSDSLNKR 289
           K  IE H STSD  NK+
Sbjct: 102 KPAIETHASTSDVANKK 118


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 101

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 8  GNFIITYKKIFIYNMAI 58
          G ++ TYK+ F++N  +
Sbjct: 37 GTYLFTYKEAFVFNTVV 53


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 218  CSQLMTCKQCIEIHQSTS-DSLNKRIFIK 301
            C QL   K+ ++ HQ TS  S+ K + +K
Sbjct: 1611 CGQLQRLKETLQEHQMTSVQSICKSLTVK 1639


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 304 FFDEDSFIKTITGTLMYFNALFTSHQL*ALVSH*HIKIRTCRNTLVDYAVSRLI 143
           FF    ++  IT +++ F  LF S+    ++SH      TC +  +D  V+ ++
Sbjct: 162 FFRTFRYVFLIT-SIIEFGGLFASNGKRGVLSHFRSSYITCDSKALDRIVNSIV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,095
Number of Sequences: 5004
Number of extensions: 19608
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)