Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14g04
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical ...    44   1e-04
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    28   6.5  

>AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical
           protein F43E2.2 protein.
          Length = 232

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = +1

Query: 520 VEEDAADLQFPKEFE--NAETLMISEVDMLLENRKAQNESAE 639
           VEEDAA+ +FPKEFE    + L+ +EV +LLE+R+  +ES +
Sbjct: 102 VEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKD 143


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 523 EEDAADLQFPKEFENAETLMISEVDMLLENRKAQNESAE 639
           EE+  ++QF ++     TL I + D+++EN   +N  +E
Sbjct: 55  EENTPEVQFEQDENEENTLQIVDSDLVIENSVTENVPSE 93


>U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical
           protein B0507.4 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 4   LDDLSNVYGNFKKLYLVNRESPQLKILQKSFYL*VLSTKIL*TSKSTD 147
           L++ S ++ NF+ +Y+ + E   ++++QKS  L +++ K+L    S D
Sbjct: 95  LNNFSTIFNNFEIMYIDHPEGLFIRVIQKS--LCMIAVKLLEIRNSLD 140


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = -3

Query: 533 ASSSTTYCRGPVMMMDLYGD*LKNLSQIQEYS*IFII 423
           +++   YC  P +M+ +YGD  +N + +  +  + ++
Sbjct: 383 STNELAYCAKPAVMVPIYGDQTRNANMLARHGSVIVL 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,077
Number of Sequences: 27780
Number of extensions: 243878
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)