Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14g03
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate de...   105   1e-22
CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.                105   1e-22
BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,...   105   1e-22
AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase pr...   105   1e-22
AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.             105   1e-22

>DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate
           dehydrogenase 2, NAD protein.
          Length = 305

 Score =  105 bits (252), Expect = 1e-22
 Identities = 46/158 (29%), Positives = 86/158 (54%)
 Frame = +2

Query: 167 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 346
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 5   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 63

Query: 347 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 526
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 64  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 123

Query: 527 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYA 640
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+    A
Sbjct: 124 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 161


>CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.
          Length = 338

 Score =  105 bits (252), Expect = 1e-22
 Identities = 46/158 (29%), Positives = 86/158 (54%)
 Frame = +2

Query: 167 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 346
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 347 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 526
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 527 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYA 640
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+    A
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 182


>BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,
           NAD (mitochondrial) protein.
          Length = 338

 Score =  105 bits (252), Expect = 1e-22
 Identities = 46/158 (29%), Positives = 86/158 (54%)
 Frame = +2

Query: 167 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 346
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 347 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 526
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 527 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYA 640
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+    A
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 182


>AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase
           precursor protein.
          Length = 338

 Score =  105 bits (252), Expect = 1e-22
 Identities = 46/158 (29%), Positives = 86/158 (54%)
 Frame = +2

Query: 167 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 346
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 347 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 526
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 527 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYA 640
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+    A
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 182


>AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.
          Length = 316

 Score =  105 bits (252), Expect = 1e-22
 Identities = 46/158 (29%), Positives = 86/158 (54%)
 Frame = +2

Query: 167 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 346
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 4   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 62

Query: 347 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 526
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 63  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 122

Query: 527 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYA 640
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+    A
Sbjct: 123 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,890,464
Number of Sequences: 237096
Number of extensions: 1461707
Number of successful extensions: 2640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)