Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f22
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    29   2.9  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   2.9  
09_04_0524 + 18321110-18323978,18324098-18324576                       28   5.1  

>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 57  YVTRKYCNKMWKLTVLGVFLTVTYVYSHT 143
           YV+R Y   MW L+ L + LT TY  S T
Sbjct: 297 YVSRWYMRMMWPLSWLSMVLTWTYGSSFT 325


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 246 HCITYNFSRTDEPGQYQLEQDSQHFILGLTPLKHDYKYTGVLTVPDPAVP 395
           HC++       +PG Y     S  FI     +    +Y G  T P PAVP
Sbjct: 266 HCLSVLVDADQKPGDYYAVA-STRFIHEAKSVSAVIRYAGSSTPPSPAVP 314


>09_04_0524 + 18321110-18323978,18324098-18324576
          Length = 1115

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 407 GSIPSERCRLSKLHSFGNGLHNIR 478
           G+IP E CRLSKL S     +++R
Sbjct: 146 GAIPPELCRLSKLESLSLNSNSLR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,999
Number of Sequences: 37544
Number of extensions: 259163
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)